Defining transcribed regions using RNA-seq (Q38431799)

3 September 2017

title

Defining transcribed regions using RNA-seq (English)

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3 September 2017

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Jürg Bähler

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author name string

Brian T Wilhelm

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3 September 2017

Samuel Marguerat

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3 September 2017

Ian Goodhead

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3 September 2017

Jürg Bähler

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3 September 2017

publication date

21 January 2010

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3 September 2017

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3 September 2017

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3 September 2017

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3 September 2017

page(s)

255-266

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describes a project that uses

3 September 2017

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Genome-wide transcription and the implications for genomic organization

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Long non-coding RNAs: insights into functions

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Origins and Mechanisms of miRNAs and siRNAs

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Next-generation DNA sequencing methods

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Stem cell transcriptome profiling via massive-scale mRNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.229

A large genome center's improvements to the Illumina sequencing system

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Paired-end mapping reveals extensive structural variation in the human genome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Transcriptome analysis by strand-specific sequencing of complementary DNA.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Clusters of internally primed transcripts reveal novel long noncoding RNAs

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Probabilistic base calling of Solexa sequencing data

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Swift: primary data analysis for the Illumina Solexa sequencing platform.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Annotating genomes with massive-scale RNA sequencing

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Wasp gene expression supports an evolutionary link between maternal behavior and eusociality.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

How to map billions of short reads onto genomes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

SHRiMP: accurate mapping of short color-space reads

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

SOAP: short oligonucleotide alignment program

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

RNA-seq: from technology to biology

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

A simple method for directional transcriptome sequencing using Illumina technology

31 March 2020

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

Base-calling of automated sequencer traces using phred. II. Error probabilities

31 March 2020

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

BLAT—The BLAST-Like Alignment Tool

31 March 2020

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https://api.crossref.org/works/10.1038%2FNPROT.2009.229

31 March 2020

Identifiers

DOI

10.1038/NPROT.2009.229

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Dimensions Publication ID

3 September 2017

1023913937

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