The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries (Q37616507)

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scientific article published on February 2014

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English	The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries	scientific article published on February 2014

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scholarly article

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21 August 2017

The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries (English)

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21 August 2017

Romain Guérillot

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24418649%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Michael Chandler

4

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31 May 2020

Philippe Glaser

5

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31 May 2020

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Patricia Siguier

2

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31 May 2020

Edith Gourbeyre

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31 May 2020

publication date

1 February 2014

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21 August 2017

Genome Biology and Evolution

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31 May 2020

6

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31 May 2020

2

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31 May 2020

260-272

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31 May 2020

describes a project that uses

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Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain

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23 August 2017

Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading

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23 August 2017

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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23 August 2017

The Mu transpososome structure sheds light on DDE recombinase evolution

1 reference

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23 August 2017

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23 August 2017

The ParA/MinD family puts things in their place

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23 August 2017

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23 August 2017

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23 August 2017

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

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Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective

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Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition

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23 August 2017

Transposases are the most abundant, most ubiquitous genes in nature.

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23 August 2017

Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.

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23 August 2017

Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus

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23 August 2017

Atypical association of DDE transposition with conjugation specifies a new family of mobile elements.

1 reference

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23 August 2017

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

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23 August 2017

The Jpred 3 secondary structure prediction server

1 reference

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23 August 2017

Integration of biological networks and gene expression data using Cytoscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Insertion sequence diversity in archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Insertion sequences in prokaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

A new integrative conjugative element occurs in Mycoplasma agalactiae as chromosomal and free circular forms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Repbase Update, a database of eukaryotic repetitive elements

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23 August 2017

Regulation of transposition in bacteria.

1 reference

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23 August 2017

WebLogo: A Sequence Logo Generator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

The outs and ins of transposition: from mu to kangaroo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Transposase and cointegrase: specialized transposition proteins of the bacterial insertion sequence IS21 and related elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Integrating DNA: transposases and retroviral integrases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Insertion sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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23 August 2017

Transposon Tn3 encodes a site-specific recombination system: identification of essential sequences, genes, and actual site of recombination

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23 August 2017

An extrachromosomal form of the Mu transposons of maize

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23 August 2017

Transposase-induced excision and circularization of the bacterial insertion sequence IS911

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

23 August 2017

Transposase-dependent formation of circular IS256 derivatives in Staphylococcus epidermidis and Staphylococcus aureus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

14 September 2017

Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences

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14 September 2017

In vivo definition of an archaeal promoter

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14 September 2017

Translational frameshifting in the control of transposition in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

28 September 2017

IS1-mediated intramolecular rearrangements: formation of excised transposon circles and replicative deletions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

28 September 2017

Alpha3, a transposable element that promotes host sexual reproduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

25 June 2018

Identification of a novel variant of staphylococcal cassette chromosome mec, type II.5, and Its truncated form by insertion of putative conjugative transposon Tn6012.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942029

25 June 2018

Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae.

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25 June 2018

Bias between the left and right inverted repeats during IS911 targeted insertion.

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25 June 2018

Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains

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25 June 2018

Characterization of the virA gene of the agropine-type plasmid pRiA4 of Agrobacterium rhizogenes.

1 reference

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25 June 2018

Characterization of the transposase encoded by IS256, the prototype of a major family of bacterial insertion sequence elements

1 reference

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1 September 2018

The new IS1595 family, its relation to IS1 and the frontier between insertion sequences and transposons.

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1 September 2018

Analysis of the DDE motif in the Mutator superfamily.

1 reference

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1 September 2018

Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element

1 reference

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1 September 2018

Formation and transposition of the covalently closed IS30 circle: the relation between tandem dimers and monomeric circles

1 reference

https://pubmed.ncbi.nlm.nih.gov/24418649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the N-terminal DNA binding domain of the IS30 transposase

1 reference

https://pubmed.ncbi.nlm.nih.gov/24418649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel mechanism of phase variation of virulence in Staphylococcus epidermidis: evidence for control of the polysaccharide intercellular adhesin synthesis by alternating insertion and excision of the insertion sequence element IS256

1 reference

https://pubmed.ncbi.nlm.nih.gov/24418649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposable element Mu1 is found in multiple copies only in Robertson's Mutator maize lines

1 reference

https://pubmed.ncbi.nlm.nih.gov/24418649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GBE/EVU010

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24418649%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24418649%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24418649%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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