Transposases are the most abundant, most ubiquitous genes in nature. (Q34020170)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

review article

1 reference

title

Transposases are the most abundant, most ubiquitous genes in nature (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

28 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Robert A Edwards

1 reference

PubMed publication ID

20215432

30 July 2017

language of work or name

English

0 references

publication date

9 March 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

published in

Nucleic Acids Research

2 references

28 September 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

4207-4217

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 2.5 Generic

19 January 2020

1 reference

Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.

28 September 2019

cites work

1 reference

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

28 July 2018

1 reference

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New dimensions of the virus world discovered through metagenomics

28 July 2018

1 reference

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Identifying natural product biosynthetic genes from a soil metagenome by using T7 phage selection.

28 July 2018

1 reference

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The impact of retrotransposons on human genome evolution

28 July 2018

1 reference

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The case for biocentric microbiology

28 July 2018

1 reference

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Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm

28 July 2018

1 reference

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A flood of microbial genomes-do we need more?

28 July 2018

1 reference

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Studying the human gut microbiota in the trans-omics era--focus on metagenomics and metabonomics

28 July 2018

1 reference

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Microbial co-habitation and lateral gene transfer: what transposases can tell us.

28 July 2018

1 reference

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A functional role for transposases in a large eukaryotic genome

28 July 2018

1 reference

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Darwinian evolution in the light of genomics

28 July 2018

1 reference

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Methods for comparative metagenomics

28 July 2018

1 reference

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High abundance of virulence gene homologues in marine bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase

28 July 2018

1 reference

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A bioinformatician's guide to metagenomics

28 July 2018

1 reference

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Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Genome-wide analysis of the "cut-and-paste" transposons of grapevine.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Amplification of uncultured single-stranded DNA viruses from rice paddy soil

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Functional metagenomic profiling of nine biomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Microbial ecology of four coral atolls in the Northern Line Islands.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Phylogenetic classification of short environmental DNA fragments

28 July 2018

1 reference

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The RAST Server: rapid annotations using subsystems technology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities

28 July 2018

1 reference

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Gastrointestinal microbiology enters the metagenomics era.

28 July 2018

1 reference

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The Pfam protein families database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Transposase-derived transcription factors regulate light signaling in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenomic approach to the study of halophages: the environmental halophage 1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Which transposable elements are active in the human genome?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The marine viromes of four oceanic regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Positive selection on transposase genes of insertion sequences in the Crocosphaera watsonii genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenomic analysis of the human distal gut microbiome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The nature and dynamics of bacterial genomes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

An application of statistics to comparative metagenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Community genomics among stratified microbial assemblages in the ocean's interior

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Here a virus, there a virus, everywhere the same virus?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Comparative metagenomics of microbial communities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenomics: application of genomics to uncultured microorganisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Metagenomics: genomic analysis of microbial communities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Microfluidic device reads up to four consecutive base pairs in DNA sequencing-by-synthesis

28 July 2018

1 reference

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Enhanced translation of a chloroplast-expressed RbcS gene restores small subunit levels and photosynthesis in nuclear RbcS antisense plants

28 July 2018

1 reference

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Environmental genome shotgun sequencing of the Sargasso Sea

28 July 2018

1 reference

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The outs and ins of transposition: from mu to kangaroo

28 July 2018

1 reference

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Metagenomic analyses of an uncultured viral community from human feces

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Biotechnological prospects from metagenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Exploring prokaryotic diversity in the genomic era

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Initial sequencing and analysis of the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

The Sequence of the Human Genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Pyrosequencing sheds light on DNA sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Prokaryotes: the unseen majority

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Many human L1 elements are capable of retrotransposition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Real-time DNA sequencing using detection of pyrophosphate release

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

LTR-retrotransposons and MITEs: important players in the evolution of plant genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Selfish DNA: the best defense is a good offense

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Differential roles of the transposon termini in IS91 transposition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Selfish genes, the phenotype paradigm and genome evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

Selfish DNA: the ultimate parasite

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Low genomic diversity in tropical oceanic N2-fixing cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Genomic analysis of uncultured marine viral communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Next-generation sequencing transforms today's biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Metagenomic analysis of stressed coral holobionts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Viral and microbial community dynamics in four aquatic environments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

A bacterial metapopulation adapts locally to phage predation despite global dispersal

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Using pyrosequencing to shed light on deep mine microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

A core gut microbiome in obese and lean twins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Microbiology: metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Comparative architecture of transposase and integrase complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Genome evolution: sex and the transposable element

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Evidence that a family of miniature inverted-repeat transposable elements (MITEs) from the Arabidopsis thaliana genome has arisen from a pogo-like DNA transposon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ140

Genome sequencing in microfabricated high-density picolitre reactors

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910039

On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20215432

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bacteriophage distribution in human faeces: continuous survey of healthy subjects and patients with internal and leukaemic diseases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20215432

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

release_grjqyz4mvfaove24dxxi3wydgy

19 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/grjqyz4mvfaove24dxxi3wydgy

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

PubMed publication ID

20215432

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20215432%20AND%20SRC:MED&resulttype=core&format=json