Polyethylene glycol binding alters human telomere G-quadruplex structure by conformational selection (Q37148464)

18 August 2017

Polyethylene glycol binding alters human telomere G-quadruplex structure by conformational selection (English)

1 reference

18 August 2017

Robert Buscaglia

1 reference

18 August 2017

M Clarke Miller

1 reference

18 August 2017

William L Dean

1 reference

18 August 2017

Robert D Gray

1 reference

18 August 2017

Andrew N Lane

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18 August 2017

John O Trent

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18 August 2017

Jonathan B Chaires

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18 August 2017

language of work or name

English

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publication date

26 June 2013

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18 August 2017

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inferred from page(s)

published in

Nucleic Acids Research

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18 August 2017

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18 August 2017

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18 August 2017

7934-7946

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Creative Commons Attribution-NonCommercial 3.0 Unported

18 August 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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Studying the effect of crowding and dehydration on DNA G-quadruplexes

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The stability of intramolecular DNA G-quadruplexes compared with other macromolecules

6 September 2017

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Separation of preferential interaction and excluded volume effects on DNA duplex and hairpin stability

6 September 2017

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Analysis of multidimensional G-quadruplex melting curves

6 September 2017

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Structure of Human Telomeric DNA in Crowded Solution

6 September 2017

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Chemistry in human telomere biology: structure, function and targeting of telomere DNA/RNA

6 September 2017

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Determination of Nucleic Acid Hydration Using Osmotic Stress

6 September 2017

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Structural insights into G-quadruplexes: towards new anticancer drugs

6 September 2017

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Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

6 September 2017

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Sedimentation velocity ultracentrifugation analysis for hydrodynamic characterization of G-quadruplex structures

6 September 2017

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Characterization of a K+-induced conformational switch in a human telomeric DNA oligonucleotide using 2-aminopurine fluorescence

6 September 2017

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Energetics and kinetics of a conformational switch in G-quadruplex DNA

6 September 2017

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Structure of the Human Telomere in K + Solution: A Stable Basket-Type G-Quadruplex with Only Two G-Tetrad Layers

6 September 2017

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Stability and kinetics of G-quadruplex structures

6 September 2017

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Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

6 September 2017

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Structural polymorphism of intramolecular quadruplex of human telomeric DNA: effect of cations, quadruplex-binding drugs and flanking sequences

6 September 2017

1 reference

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Quadruplex DNA crystal structures and drug design

6 September 2017

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Water as an active constituent in cell biology

6 September 2017

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Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics

6 September 2017

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Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution

6 September 2017

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Electrostatics dominate quadruplex stability

6 September 2017

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Quadruplex DNA: sequence, topology and structure

6 September 2017

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Do we underestimate the importance of water in cell biology?

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution

6 September 2017

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Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal

6 September 2017

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Preferential binding of a G-quadruplex ligand to human chromosome ends.

6 September 2017

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Covalent ligation studies on the human telomere quadruplex

6 September 2017

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Intramolecular quadruplex conformation of human telomeric DNA assessed with 125I-radioprobing

6 September 2017

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Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics

6 September 2017

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Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer

6 September 2017

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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

6 September 2017

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Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges.

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Platinum cross-linking of adenines and guanines on the quadruplex structures of the AG3(T2AG3)3 and (T2AG3)4 human telomere sequences in Na+ and K+ solutions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Crystal structure of parallel quadruplexes from human telomeric DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Protein-water interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Calculation of hydrodynamic properties of small nucleic acids from their atomic structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Macromolecular crowding: obvious but underappreciated

6 September 2017

1 reference

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Macromolecular crowding: an important but neglected aspect of the intracellular environment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Normal human chromosomes have long G-rich telomeric overhangs at one end

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

The Hill equation revisited: uses and misuses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Macromolecules and water: probing with osmotic stress

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Determination of molecular weight of the protein moiety in protein-detergent complexes without direct knowledge of detergent binding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Macromolecular crowding: biochemical, biophysical, and physiological consequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Arrangements of human telomere DNA quadruplex in physiologically relevant K+ solutions

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Phenomenological partial-specific volumes for G-quadruplex DNAs

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

G-quadruplex formation in human telomeric (TTAGGG)4 sequence with complementary strand in close vicinity under molecularly crowded condition.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Protein solvation in allosteric regulation: a water effect on hemoglobin

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Energetic basis of human telomeric DNA folding into G-quadruplex structures

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

The Hill coefficient: inadequate resolution of cooperativity in human hemoglobin

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Hydration regulates the thermodynamic stability of DNA structures under molecular crowding conditions

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

An improved fit to Website osmotic pressure data

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763525

Circular Dichroism of Quadruplex Structures

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT440

G-Quadruplexes from Human Telomeric DNA: How Many Conformations in PEG Containing Solutions?

21 January 2018

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Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT440

Evaluation of uncertainties for parameters in binding studies: the sum-of-squares profile and Monte Carlo estimation

21 January 2018

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12 December 2020

Macromolecular crowding and molecular recognition

1 reference

12 December 2020

Human telomere sequence DNA in water-free and high-viscosity solvents: G-quadruplex folding governed by Kramers rate theory

1 reference

12 December 2020

Hydration is a major determinant of the G-quadruplex stability and conformation of the human telomere 3' sequence of d(AG3(TTAG3)3)

1 reference

12 December 2020

Macromolecular crowding

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12 December 2020

The new models of the human telomere d[AGGG(TTAGGG)3] in K+ solution

1 reference

12 December 2020

Thermodynamic characterization of interactions of native bovine serum albumin with highly excluded (glycine betaine) and moderately accumulated (urea) solutes by a novel application of vapor pressure osmometry

1 reference

12 December 2020

Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA

1 reference

12 December 2020

Molecular crowding induces telomere G-quadruplex formation under salt-deficient conditions and enhances its competition with duplex formation

1 reference

12 December 2020

Unfolding of G-quadruplexes: energetic, and ion and water contributions of G-quartet stacking

1 reference

12 December 2020

Human telomeric DNA forms parallel-stranded intramolecular G-quadruplex in K+ solution under molecular crowding condition

1 reference

12 December 2020

The structural transition and compaction of human telomeric G-quadruplex induced by excluded volume effect under cation-deficient conditions

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12 December 2020

Human telomeric G-quadruplex formed from duplex under near physiological conditions: spectroscopic evidence and kinetics

1 reference

12 December 2020

Human telomeric quadruplex conformations studied by pulsed EPR

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12 December 2020

Polyethylene glycol behaves like weak organic solvent

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKT440

1 reference

18 August 2017

1 reference

18 August 2017

PubMed publication ID

23804761

1 reference