Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome (Q36900532)

17 August 2017

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title

Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome (English)

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17 August 2017

author

Dorota Piekna-Przybylska

series ordinal

object named as

Dorota Piekna-Przybylska

1 reference

17 August 2017

Wayne A Decatur

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17 August 2017

Xue-hai Liang

series ordinal

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17 August 2017

Maurille J Fournier

series ordinal

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17 August 2017

language of work or name

English

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publication date

1 January 2007

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17 August 2017

published in

Methods in Enzymology

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17 August 2017

volume

425

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17 August 2017

page(s)

283-316

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Development and characterization of a reconstituted yeast translation initiation system.

17 August 2017

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The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli.

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Requirement of the DEAD-Box protein ded1p for messenger RNA translation

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Multiple regions of yeast ribosomal protein L1 are important for its interaction with 5 S rRNA and assembly into ribosomes.

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Yeast ribosomal protein L24 affects the kinetics of protein synthesis and ribosomal protein L39 improves translational accuracy, while mutants lacking both remain viable

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Has1p, a member of the DEAD-box family, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae.

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7 January 2021

Ssf1p prevents premature processing of an early pre-60S ribosomal particle

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7 January 2021

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits

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7 January 2021

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Insights into the structure and function of a guide RNP

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Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis

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Improved method for high efficiency transformation of intact yeast cells

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Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method

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Drugs targeting the ribosome

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Biomolecules in the computer: Jmol to the rescue

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Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity

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Probing the conformation of 18S rRNA in yeast 40S ribosomal subunits with kethoxal

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Probing the conformation of 26S rRNA in yeast 60S ribosomal subunits with kethoxal

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7 January 2021

Cap-dependent and cap-independent translation by internal initiation of mRNAs in cell extracts prepared from Saccharomyces cerevisiae

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Translation-competent extracts from Saccharomyces cerevisiae: effects of L-A RNA, 5' cap, and 3' poly(A) tail on translational efficiency of mRNAs

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Systematic analysis of bicistronic reporter assay data

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Expression of a transposable antibiotic resistance element in Saccharomyces

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A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins.

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7 January 2021

Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center

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7 January 2021

The kink-turn: a new RNA secondary structure motif

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Enzymatic approaches to probing of RNA secondary and tertiary structure

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Preparation of high molecular weight RNA

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The Putative RNA Helicase Dbp4p Is Required for Release of the U14 snoRNA from Preribosomes in Saccharomyces cerevisiae

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The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

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Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage

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Conformation of yeast 18S rRNA. Direct chemical probing of the 5' domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulfate-accessible.

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How a single protein complex accommodates many different H/ACA RNAs

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An in vivo and in vitro structure-function analysis of the Saccharomyces cerevisiae U3A snoRNP: protein-RNA contacts and base-pair interaction with the pre-ribosomal RNA 1 1Edited by M. Yaniv

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The ribosome revealed

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Impact of the six nucleotides downstream of the stop codon on translation termination

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Reprogrammed genetic decoding in cellular gene expression.

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Synthesis of large rRNAs by RNA polymerase II in mutants of Saccharomyces cerevisiae defective in RNA polymerase I

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Analysis of the binding of the N-terminal conserved domain of yeast Cbf5p to a box H/ACA snoRNA.

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Analysis of the secondary structure of expansion segment 39 in ribosomes from fungi, plants and mammals

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Structural alterations of the nucleolus in mutants of Saccharomyces cerevisiae defective in RNA polymerase I.

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Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts

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Selection of tRNA by the ribosome requires a transition from an open to a closed form

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7 January 2021

Structural insights into translational fidelity

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7 January 2021

Homologs of small nucleolar RNAs in Archaea

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7 January 2021

In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex

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7 January 2021

Temperature-sensitive Mutations of the CKA1 Gene Reveal a Role for Casein Kinase II in Maintenance of Cell Polarity in Saccharomyces cerevisiae

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7 January 2021

A functional interaction between ribosomal proteins S7 and S11 within the bacterial ribosome

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7 January 2021

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

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7 January 2021

Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome

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7 January 2021

Structures of the bacterial ribosome at 3.5 A resolution

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7 January 2021

Structure of the 70S ribosome complexed with mRNA and tRNA

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7 January 2021

Two yeast La motif-containing proteins are RNA-binding proteins that associate with polyribosomes

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7 January 2021

Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions

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7 January 2021

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

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7 January 2021

Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain

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7 January 2021

Versatile vectors to study recoding: conservation of rules between yeast and mammalian cells.

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7 January 2021

Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae.

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7 January 2021

Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

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7 January 2021

A 2-microm DNA-based marker recycling system for multiple gene disruption in the yeast Saccharomyces cerevisiae

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7 January 2021

Ribosomal proteins Rps0 and Rps21 of Saccharomyces cerevisiae have overlapping functions in the maturation of the 3' end of 18S rRNA.

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7 January 2021

Translation initiation factor eIF4G mediates in vitro poly(A) tail-dependent translation

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7 January 2021

Antibiotics and the ribosome.

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7 January 2021

Sequence and genetic analysis of a dispensible 189 nucleotide snRNA from Saccharomyces cerevisiae

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7 January 2021

A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA

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7 January 2021

Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly

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7 January 2021

The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae

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7 January 2021

The red/white colony color assay in the yeast Saccharomyces cerevisiae: epistatic growth advantage of white ade8-18, ade2 cells over red ade2 cells

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7 January 2021

Domain III of Saccharomyces cerevisiae 25 S ribosomal RNA: its role in binding of ribosomal protein L25 and 60 S subunit formation

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7 January 2021

Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome

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7 January 2021

Ribosome synthesis in Saccharomyces cerevisiae

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7 January 2021

Deletion of the three distal S1 motifs of Saccharomyces cerevisiae Rrp5p abolishes pre-rRNA processing at site A(2) without reducing the production of functional 40S subunits

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7 January 2021

Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution

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7 January 2021

The discovery of polyribosomes.

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7 January 2021

Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

Genome-wide prediction of stop codon readthrough during translation in the yeast Saccharomyces cerevisiae.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

Preparation and analysis of low molecular weight RNAs and small ribonucleoproteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

Crystal structure of the ribosome at 5.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

The path of messenger RNA through the ribosome

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

The yeast SIS1 protein, a DnaJ homolog, is required for the initiation of translation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

Inhibition by antibiotics of the growth of bacterial and yeast protoplasts

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2925013-X

7 January 2021

10.1016/S0076-6879(07)25013-X

Identifiers

DOI

1 reference

17 August 2017

1 reference