Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes (Q36676741)

15 August 2017

Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes (English)

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15 August 2017

Jiali Zhuang

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15 August 2017

Zhiping Weng

series ordinal

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15 August 2017

language of work or name

English

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publication date

17 August 2015

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15 August 2017

Nucleic Acids Research

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15 August 2017

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15 August 2017

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15 August 2017

8146-8156

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Creative Commons Attribution-NonCommercial 4.0 International

15 August 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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JAK1 truncating mutations in gynecologic cancer define new role of cancer-associated protein tyrosine kinase aberrations

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The somatic genomic landscape of glioblastoma

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Repair of strand breaks by homologous recombination

30 September 2017

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PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data

30 September 2017

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Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

30 September 2017

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Microhomology-mediated End Joining and Homologous Recombination share the initial end resection step to repair DNA double-strand breaks in mammalian cells

30 September 2017

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Alternative end-joining mechanisms: a historical perspective

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Cancer genome landscapes

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Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms

30 September 2017

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30 September 2017

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

30 September 2017

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An integrated encyclopedia of DNA elements in the human genome

30 September 2017

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YAHA: fast and flexible long-read alignment with optimal breakpoint detection

30 September 2017

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Homologous recombination and its regulation

30 September 2017

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

30 September 2017

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De novo assembly and genotyping of variants using colored de Bruijn graphs

30 September 2017

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Structural basis for histone H3 Lys 27 demethylation by UTX/KDM6A

30 September 2017

1 reference

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CREST maps somatic structural variation in cancer genomes with base-pair resolution.

30 September 2017

1 reference

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Genome structural variation discovery and genotyping

30 September 2017

1 reference

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AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision

30 September 2017

1 reference

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JAK1 activates STAT3 activity in non-small-cell lung cancer cells and IL-6 neutralizing antibodies can suppress JAK1-STAT3 signaling

30 September 2017

1 reference

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Massive genomic rearrangement acquired in a single catastrophic event during cancer development

30 September 2017

1 reference

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De novo rates and selection of large copy number variation

30 September 2017

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Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

30 September 2017

1 reference

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

30 September 2017

1 reference

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Mechanisms of change in gene copy number

30 September 2017

1 reference

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

30 September 2017

1 reference

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A microhomology-mediated break-induced replication model for the origin of human copy number variation

30 September 2017

1 reference

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

The function of BCL9 in Wnt/beta-catenin signaling and colorectal cancer cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

The endless tale of non-homologous end-joining

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

Crystal structure of a beta-catenin/BCL9/Tcf4 complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

BLAT—The BLAST-Like Alignment Tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

Diverse mechanisms of somatic structural variations in human cancer genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

RSVSim: an R/Bioconductor package for the simulation of structural variations

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

pIRS: Profile-based Illumina pair-end reads simulator

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4787836

5 September 2018

Identifiers

DOI

10.1093/NAR/GKV831

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

26283183

1 reference