Entropy in molecular recognition by proteins. (Q36393570)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28584100%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

title

Entropy in molecular recognition by proteins (English)

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22 March 2020

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22 March 2020

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22 March 2020

José A Caro

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22 March 2020

Kyle W Harpole

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22 March 2020

Vignesh Kasinath

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22 March 2020

Jeffrey Granja

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22 March 2020

Kathleen G Valentine

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22 March 2020

Kim A Sharp

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22 March 2020

language of work or name

English

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publication date

5 June 2017

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Proceedings of the National Academy of Sciences of the United States of America

22 March 2020

published in

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22 March 2020

volume

114

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22 March 2020

issue

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22 March 2020

page(s)

6563-6568

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The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation

22 March 2020

cites work

1 reference

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Protein activity regulation by conformational entropy

27 July 2018

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Thermal coefficients of the methyl groups within ubiquitin.

27 July 2018

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Accessing protein conformational ensembles using room-temperature X-ray crystallography

27 July 2018

1 reference

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Ligand binding to protein-binding pockets with wet and dry regions

27 July 2018

1 reference

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Site-resolved measurement of water-protein interactions by solution NMR.

27 July 2018

1 reference

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Comparison of entropic contributions to binding in a "hydrophilic" versus "hydrophobic" ligand-protein interaction

27 July 2018

1 reference

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The role of conformational entropy in molecular recognition by calmodulin

27 July 2018

1 reference

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A comprehensive examination of the contributions to the binding entropy of protein-ligand complexes

27 July 2018

1 reference

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Theory of free energy and entropy in noncovalent binding

27 July 2018

1 reference

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Conformational entropy in molecular recognition by proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution

27 July 2018

1 reference

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Heat capacity in proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

The CCP4 suite: programs for protein crystallography

27 July 2018

1 reference

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Structural basis of macromolecular recognition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Temperature dependence of the internal dynamics of a calmodulin-peptide complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Tick histamine-binding proteins: isolation, cloning, and three-dimensional structure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Assessing potential bias in the determination of rotational correlation times of proteins by NMR relaxation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

The statistical-thermodynamic basis for computation of binding affinities: a critical review

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Insights into the local residual entropy of proteins provided by NMR relaxation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

A hot spot of binding energy in a hormone-receptor interface

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Dominant forces in protein folding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Heat capacity and entropy changes in processes involving proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

On the relationship between NMR-derived amide order parameters and protein backbone entropy changes

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

E pluribus unum, no more: from one crystal, many conformations

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Dynamic and thermodynamic response of the Ras protein Cdc42Hs upon association with the effector domain of PAK3.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

The ensemble nature of allostery

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

High-resolution NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Microscopic insights into the NMR relaxation-based protein conformational entropy meter

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

A 13C labeling strategy reveals a range of aromatic side chain motion in calmodulin

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Identification of endogenous ligands bound to bacterially expressed human and E. coli dihydrofolate reductase by 2D NMR.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Methyl rotation barriers in proteins from 2H relaxation data. Implications for protein structure

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Temperature dependence of fast dynamics in proteins.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

A statistical thermodynamic model of the protein ensemble

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Interfaces and the driving force of hydrophobic assembly

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Protein hydration dynamics in solution: a critical survey

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Side-chain dynamics of the SAP SH2 domain correlate with a binding hot spot and a region with conformational plasticity

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

On the calculation of absolute macromolecular binding free energies

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

A direct test of the reductionist approach to structural studies of calmodulin activity: relevance of peptide models of target proteins.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

A high affinity serotonin- and histamine-binding lipocalin from tick saliva.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Direct measurement of protein binding energetics by isothermal titration calorimetry

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Subsite binding in an RNase: structure of a barnase-tetranucleotide complex at 1.76-A resolution

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

The role of protein fluctuations in enzyme action: a review

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Temperature dependence of the hydrophobic interaction in protein folding

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Configurational entropy of native proteins

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488930

Microscopic origins of entropy, heat capacity and the glass transition in proteins

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1621154114

Energetics of target peptide recognition by calmodulin: a calorimetric study

21 January 2018

1 reference

12 December 2020

Allostery without conformational change. A plausible model

1 reference

12 December 2020

Structural characterization of the interactions between calmodulin and skeletal muscle myosin light chain kinase: effect of peptide (576-594)G binding on the Ca2+-binding domains

1 reference

12 December 2020

The heat capacity of proteins

1 reference

12 December 2020

Protein hydration in aqueous solution

1 reference

12 December 2020

Calculation of Configurational Entropy with a Boltzmann–Quasiharmonic Model: The Origin of High-Affinity Protein–Ligand Binding

1 reference

12 December 2020

Entropy changes accompanying association reactions of proteins

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1621154114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28584100%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28584100%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

PubMed publication ID

28584100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28584100%20AND%20SRC:MED&resulttype=core&format=json