ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design (Q36393085)

1 July 2018

title

ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design (English)

1 reference

1 July 2018

0 references

Christopher W Wood

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Derek N Woolfson

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Jack W Heal

1 reference

1 July 2018

Andrew R Thomson

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1 July 2018

Gail J Bartlett

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1 July 2018

R Leo Brady

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1 July 2018

Richard B Sessions

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1 July 2018

Amaurys Á Ibarra

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1 July 2018

language of work or name

English

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publication date

1 October 2017

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1 July 2018

published in

Bioinformatics

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1 July 2018

volume

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1 July 2018

issue

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1 July 2018

page(s)

3043-3050

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1 July 2018

Creative Commons Attribution 4.0 International

start time

5 June 2017

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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3 July 2018

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3 July 2018

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Design of structurally distinct proteins using strategies inspired by evolution

3 July 2018

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Rational design of α-helical tandem repeat proteins with closed architectures

3 July 2018

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Exploring the repeat protein universe through computational protein design

3 July 2018

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3 July 2018

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3 July 2018

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High-resolution crystal structures of protein helices reconciled with three-centered hydrogen bonds and multipole electrostatics

3 July 2018

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Protein design: Past, present, and future

3 July 2018

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Automated de novo phasing and model building of coiled-coil proteins

3 July 2018

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3 July 2018

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3 July 2018

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A general computational approach for repeat protein design

3 July 2018

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3 July 2018

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High thermodynamic stability of parametrically designed helical bundles

3 July 2018

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3 July 2018

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A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology

3 July 2018

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OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation

3 July 2018

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New currency for old rope: from coiled-coil assemblies to α-helical barrels.

3 July 2018

1 reference

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DARPins and other repeat protein scaffolds: advances in engineering and applications

3 July 2018

1 reference

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Computational Design of Virus-Like Protein Assemblies on Carbon Nanotube Surfaces

3 July 2018

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Probing Designability via a Generalized Model of Helical Bundle Geometry

3 July 2018

1 reference

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De novo self-assembling collagen heterotrimers using explicit positive and negative design

3 July 2018

1 reference

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PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

FREAD revisited: Accurate loop structure prediction using a database search algorithm.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Probing the "dark matter" of protein fold space.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Improved prediction of protein side-chain conformations with SCWRL4

3 July 2018

1 reference

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Collagen structure and stability

3 July 2018

1 reference

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CC+: a relational database of coiled-coil structures.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Comparative protein structure modeling using Modeller

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Macromolecular modeling with rosetta

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

The design of coiled-coil structures and assemblies

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

The structure of alpha-helical coiled coils

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

A normalized root-mean-square distance for comparing protein three-dimensional structures

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Modeling of loops in protein structures

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

High-resolution protein design with backbone freedom

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

De Novo Protein Design: Fully Automated Sequence Selection

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Crystal structure of an isoleucine-zipper trimer

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Computer modelling of the alpha-helical coiled coil: packing of side-chains in the inner core

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Repacking protein cores with backbone freedom: structure prediction for coiled coils

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Computational design of a collagen A:B:C-type heterotrimer

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Generalized Crick equations for modeling noncanonical coiled coils.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870769

Cython: The Best of Both Worlds

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX352

Rapid comparison of protein structures

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX352

Rational design of a non-canonical "sticky-ended" collagen triple helix

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28582565

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTX352

1 reference

1 July 2018

journals/bioinformatics/WoodHTBIBSW17

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 July 2018

PubMed publication ID

28582565

1 reference

1 July 2018