Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization (Q36081789)

12 August 2017

Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization (English)

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12 August 2017

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Bette Korber

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12 August 2017

Quarraisha Abdool Karim

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Linda-Gail Bekker

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object named as

Linda-Gail Bekker

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12 August 2017

M Juliana McElrath

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Peter Hraber

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Salim Abdool Karim

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Beatrice H Hahn

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Joseph Makhema

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12 August 2017

Keren Middelkoop

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Ronald Swanstrom

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David C Montefiori

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Lynn Morris

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Carolyn Williamson

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Michael Hoelscher

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Leonard Maboko

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James Kublin

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Merlin L Robb

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Jerome H Kim

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Glenda E Gray

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Michael S Seaman

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Kelli M Greene

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Cecilia Rademeyer

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Ruwayhida Thebus

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Daniel J Sheward

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Kshitij Wagh

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Jetta Garrity

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Brittany R Carey

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Gama P Bandawe

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Jinny C Marais

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Thabo E Diphoko

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Nancy Tumba

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Penny L Moore

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Marion Vermeulen

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Elena E Giorgi

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Hongmei Gao

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Alexander Robles

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Haili Tang

series ordinal

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Feng Gao

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19 July 2016

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e1005742

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Creative Commons CC0 License

12 August 2017

start time

19 July 2016

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April 2022 Public Data File from Crossref

copyrighted, dedicated to the public domain by copyright holder

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describes a project that uses

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/4951126

based on heuristic

inferred from PubMed Central ID database lookup

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

2 October 2017

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Rapid seeding of the viral reservoir prior to SIV viraemia in rhesus monkeys

2 October 2017

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HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck

2 October 2017

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Neutralizing antibodies to HIV-1 envelope protect more effectively in vivo than those to the CD4 receptor

2 October 2017

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2 October 2017

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Plasma IgG to linear epitopes in the V2 and V3 regions of HIV-1 gp120 correlate with a reduced risk of infection in the RV144 vaccine efficacy trial

2 October 2017

1 reference

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Evidence for a continuous drift of the HIV-1 species towards higher resistance to neutralizing antibodies over the course of the epidemic

2 October 2017

1 reference

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HIV-1 tropism determination using a phenotypic Env recombinant viral assay highlights overestimation of CXCR4-usage by genotypic prediction algorithms for CRF01_AE and CRF02_AG [corrected].

2 October 2017

1 reference

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Comparison of viral Env proteins from acute and chronic infections with subtype C human immunodeficiency virus type 1 identifies differences in glycosylation and CCR5 utilization and suggests a new strategy for immunogen design

2 October 2017

1 reference

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Evolution of an HIV glycan-dependent broadly neutralizing antibody epitope through immune escape

2 October 2017

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Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

2 October 2017

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Appraising the performance of genotyping tools in the prediction of coreceptor tropism in HIV-1 subtype C viruses

2 October 2017

1 reference

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Immune-correlates analysis of an HIV-1 vaccine efficacy trial

2 October 2017

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A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield

2 October 2017

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Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

2 October 2017

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Broad neutralization coverage of HIV by multiple highly potent antibodies

2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection

2 October 2017

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A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

2 October 2017

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jpHMM: improving the reliability of recombination prediction in HIV-1.

2 October 2017

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FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

2 October 2017

1 reference

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Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants

2 October 2017

1 reference

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Measuring HIV neutralization in a luciferase reporter gene assay

2 October 2017

1 reference

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

2 October 2017

1 reference

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Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

2 October 2017

1 reference

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HIV-specific probabilistic models of protein evolution

2 October 2017

1 reference

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Development and characterization of a novel single-cycle recombinant-virus assay to determine human immunodeficiency virus type 1 coreceptor tropism

2 October 2017

1 reference

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Human immunodeficiency virus type 1 V1-V2 envelope loop sequences expand and add glycosylation sites over the course of infection, and these modifications affect antibody neutralization sensitivity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Genetic and neutralization properties of subtype C human immunodeficiency virus type 1 molecular env clones from acute and early heterosexually acquired infections in Southern Africa

2 October 2017

1 reference

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Insensitivity of paediatric HIV-1 subtype C viruses to broadly neutralising monoclonal antibodies raised against subtype B

2 October 2017

1 reference

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Evidence for potent autologous neutralizing antibody titers and compact envelopes in early infection with subtype C human immunodeficiency virus type 1

2 October 2017

1 reference

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A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Recommendations for the design and use of standard virus panels to assess neutralizing antibody responses elicited by candidate human immunodeficiency virus type 1 vaccines

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Use of alternate coreceptors on primary cells by two HIV-1 isolates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Increased sensitivity to CD4 binding site-directed neutralization following in vitro propagation on primary lymphocytes of a neutralization-resistant human immunodeficiency virus IIIB strain isolated from an accidentally infected laboratory worker

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Brief but efficient: acute HIV infection and the sexual transmission of HIV.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

The V1/V2 domain of gp120 is a global regulator of the sensitivity of primary human immunodeficiency virus type 1 isolates to neutralization by antibodies commonly induced upon infection

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Dynamics of HIV viremia and antibody seroconversion in plasma donors: implications for diagnosis and staging of primary HIV infection

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Regional clustering of shared neutralization determinants on primary isolates of clade C human immunodeficiency virus type 1 from South Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Profile hidden Markov models

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Identification of the V1 region as a linear neutralizing epitope of the simian immunodeficiency virus SIVmac envelope glycoprotein.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Efficient amplification of HIV half-genomes from tissue DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Promiscuous glycan site recognition by antibodies to the high-mannose patch of gp120 broadens neutralization of HIV.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Retrieval and on-the-fly alignment of sequence fragments from the HIV database

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951126

Bioinformatics prediction of HIV coreceptor usage

5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27434311

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1005742

1 reference

release_wdjowmygffgvzkfdu7mmzwnhsi

12 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wdjowmygffgvzkfdu7mmzwnhsi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

12 August 2017

PubMed publication ID

27434311

1 reference