FastTree: computing large minimum evolution trees with profiles instead of a distance matrix (Q29614577)

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scientific article (publication date: July 2009)

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English	FastTree: computing large minimum evolution trees with profiles instead of a distance matrix	scientific article (publication date: July 2009)

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FastTree: computing large minimum evolution trees with profiles instead of a distance matrix (English)

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PubMed

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19377059

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30 April 2017

author name string

Price MN

series ordinal

1

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PubMed

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30 April 2017

Dehal PS

series ordinal

2

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Arkin AP

series ordinal

3

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30 April 2017

language of work or name

English

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30 April 2017

publication date

July 2009

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30 April 2017

published in

Molecular Biology and Evolution

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volume

26

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30 April 2017

issue

7

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30 April 2017

page(s)

1641-50

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30 April 2017

cites work

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

TreeFam: a curated database of phylogenetic trees of animal gene families

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Pfam: clans, web tools and services

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Protein molecular function prediction by Bayesian phylogenomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Scoredist: a simple and robust protein sequence distance estimator

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

The COG database: new developments in phylogenetic classification of proteins from complete genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Amino acid substitution matrices from protein blocks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

30 April 2017

Neighbor-joining revealed.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

The MicrobesOnline Web site for comparative genomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

Accurate and scalable identification of functional sites by evolutionary tracing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

Rose: generating sequence families

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

Bootstrap confidence levels for phylogenetic trees

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

A note on the neighbor-joining algorithm of Saitou and Nei.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

3 June 2018

Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

26 November 2018

Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

26 November 2018

QuickTree: building huge Neighbour-Joining trees of protein sequences.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

26 November 2018

Scaling of accuracy in extremely large phylogenetic trees

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693737

retrieved

26 November 2018

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19377059

retrieved

12 December 2020

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Identifiers

DOI

10.1093/MOLBEV/MSP077

2 references

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PubMed

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19377059

retrieved

30 April 2017

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

142938

OpenCitations bibliographic resource ID

142938

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

142938

PMC publication ID

2693737

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19377059

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

142938

PubMed publication ID

19377059

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19377059

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

142938

ResearchGate publication ID

24308026

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