Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis (Q36007346)

11 August 2017

Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis (English)

1 reference

11 August 2017

1 reference

Dunja Skoko

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11 August 2017

Daniel Yoo

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11 August 2017

Hua Bai

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11 August 2017

Bernhard Schnurr

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11 August 2017

Jie Yan

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11 August 2017

Sarah M McLeod

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11 August 2017

John F Marko

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11 August 2017

Reid C Johnson

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11 August 2017

language of work or name

English

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publication date

22 September 2006

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Journal of Molecular Biology

11 August 2017

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11 August 2017

364

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11 August 2017

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11 August 2017

777-798

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describes a project that uses

11 August 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1988847/fullTextXML

inferred from PubMed Central ID database lookup

cites work

A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure

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Organization of supercoil domains and their reorganization by transcription

2 October 2017

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2 October 2017

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Measuring chromosome dynamics on different time scales using resolvases with varying half-lives

2 October 2017

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The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin

2 October 2017

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Dual binding modes for an HMG domain from human HMGB2 on DNA

2 October 2017

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Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes

2 October 2017

1 reference

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Topological domain structure of the Escherichia coli chromosome

2 October 2017

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Stepwise dissection of the Hin-catalyzed recombination reaction from synapsis to resolution

2 October 2017

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Dual architectural roles of HU: formation of flexible hinges and rigid filaments

2 October 2017

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IHF and HU: flexible architects of bent DNA.

2 October 2017

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HU: promoting or counteracting DNA compaction?

2 October 2017

1 reference

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Equilibrium denaturation studies of the Escherichia coli factor for inversion stimulation: implications for in vivo function

2 October 2017

1 reference

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An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

2 October 2017

1 reference

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Compaction of single DNA molecules induced by binding of integration host factor (IHF).

2 October 2017

1 reference

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Genome organisation and chromatin structure in Escherichia coli

2 October 2017

1 reference

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Structural analysis of the transcriptional activation region on Fis: crystal structures of six Fis mutants with different activation properties

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

H-NS mediated compaction of DNA visualised by atomic force microscopy

2 October 2017

1 reference

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Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

2 October 2017

1 reference

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A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Behavior of supercoiled DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Information analysis of Fis binding sites

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

The transactivation region of the Fis protein that controls site-specific DNA inversion contains extended mobile beta -hairpin arms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Driving proteins off DNA using applied tension

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Location, degree, and direction of DNA bending associated with the Hin recombinational enhancer sequence and Fis-enhancer complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

The elasticity of a single supercoiled DNA molecule

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Sequence, regulation, and functions of fis in Salmonella typhimurium

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

57 Sequencing end-labeled DNA with base-specific chemical cleavages

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Identification of two functional regions in Fis: the N-terminus is required to promote Hin-mediated DNA inversion but not lambda excision

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

The Fis protein: it's not just for DNA inversion anymore

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Fis binding to the recombinational enhancer of the Hin DNA inversion system

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Three-dimensional structure of the E. coli DNA-binding protein FIS.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Folding mechanism of FIS, the intertwined, dimeric factor for inversion stimulation

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Subunit exchange and the role of dimer flexibility in DNA binding by the Fis protein

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Single-molecule studies of DNA mechanics

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmission

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Interaction of Fis protein with DNA: bending and specificity of binding.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Host protein requirements for in vitro site-specific DNA inversion.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988847

Localization of amino acids required for Fis to function as a class II transcriptional activator at the RpoS-dependent proP P2 promoter

23 September 2018

1 reference

12 December 2020

Effects of DNA-distorting proteins on DNA elastic response

1 reference

12 December 2020

Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes

1 reference

12 December 2020

Purification and properties of the Escherichia coli host factor required for inversion of the G segment in bacteriophage Mu

1 reference

12 December 2020

Formation of loops in DNA under tension

1 reference

12 December 2020

Entropic compression of interacting DNA loops

1 reference

12 December 2020

10.1016/J.JMB.2006.09.043

Identifiers

DOI

1 reference

release_qofnmak3xfhjdcmrrkayb2ygga

11 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qofnmak3xfhjdcmrrkayb2ygga

24 November 2022

mapped directly with Wikidata item

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11 August 2017

PubMed publication ID

17045294

1 reference