Measuring chromosome dynamics on different time scales using resolvases with varying half-lives (Q34375031)

1 August 2017

title

Measuring chromosome dynamics on different time scales using resolvases with varying half-lives (English)

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1 August 2017

Richard A Stein

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1 August 2017

Shuang Deng

series ordinal

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1 August 2017

N Patrick Higgins

series ordinal

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1 August 2017

language of work or name

English

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publication date

1 May 2005

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1 August 2017

published in

Molecular Microbiology

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

1049-1061

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Macrodomain organization of the Escherichia coli chromosome.

1 August 2017

cites work

1 reference

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Multiple pathways process stalled replication forks

6 July 2018

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Topological domain structure of the Escherichia coli chromosome

6 July 2018

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Linear ordering and dynamic segregation of the bacterial chromosome

6 July 2018

1 reference

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Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication

6 July 2018

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Retracted: The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure

6 July 2018

1 reference

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Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome

6 July 2018

1 reference

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Mutants suppressing novobiocin hypersensitivity of a mukB null mutation.

6 July 2018

1 reference

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Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo

6 July 2018

1 reference

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Replication fork collapse at replication terminator sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli

6 July 2018

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Distribution of the Escherichia coli structural maintenance of chromosomes (SMC)-like protein MukB in the cell

6 July 2018

1 reference

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Growth-dependent DNA breakage and cell death in a gyrase mutant of Salmonella

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

A specificity-enhancing factor for the ClpXP degradation machine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Dynamic organization of chromosomal DNA in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Replacement of the bacteriophage Mu strong gyrase site and effect on Mu DNA replication.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

In vivo supercoiling of plasmid and chromosomal DNA in an Escherichia coli hns mutant

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

The Mu strong gyrase-binding site promotes efficient synapsis of the prophage termini.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Surveying a supercoil domain by using the gamma delta resolution system in Salmonella typhimurium

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Central location of the Mu strong gyrase binding site is obligatory for optimal rates of replicative transposition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Characterization of Mu prophage lacking the central strong gyrase binding site: localization of the block in replication

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Supercoils in prokaryotic DNA restrained in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Electron microscopic studies on the folded chromosome of Escherichia coli.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

The mechanism of cruciform formation in supercoiled DNA: initial opening of central basepairs in salt-dependent extrusion

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

A DNA gyrase-binding site at the center of the bacteriophage Mu genome is required for efficient replicative transposition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Subunit-specific phenotypes of Salmonella typhimurium HU mutants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Formation of (dA-dT)n cruciforms in Escherichia coli cells under different environmental conditions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Visualization of prokaryotic DNA in a regularly condensed chromatin-like fiber

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Unequal access of chromosomal regions to each other in Salmonella: probing chromosome structure with phage lambda integrase-mediated long-range rearrangements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Communication between ClpX and ClpP during substrate processing and degradation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Spatial and temporal organization of replicating Escherichia coli chromosomes.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Replication restart in gyrB Escherichia coli mutants

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Transcription induces a supercoil domain barrier in bacteriophage Mu.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Gyrase and Topo IV modulate chromosome domain size in vivo.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Communication of ClpXP protease hypersensitivity to bacteriophage mu repressor isoforms

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

A class of gyrase mutants of Salmonella typhimurium show quinolone-like lethality and require rec functions for viability

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Contributions of supercoiling to Tn3 resolvase and phage Mu Gin site-specific recombination

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Chromosomal domains of supercoiling in Salmonella typhimurium

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Chromosomal supercoiling in Escherichia coli

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

The relative contributions of transcription and translation to plasmid DNA supercoiling in Salmonella typhimurium

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Renaturation of denatured lambda repressor requires heat shock proteins

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1373788

Transposon-mediated site-specific recombination: A defined in vitro system

27 October 2018

1 reference

12 December 2020

Left-handed DNA. Cloning, characterization, and instability of inserts containing different lengths of (dC-dG) in Escherichia coli

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12 December 2020

Site-specific relaxation and recombination by the Tn3 resolvase: recognition of the DNA path between oriented res sites

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12 December 2020

Use of site-specific recombination as a probe of DNA structure and metabolism in vivo

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12 December 2020

The energetics of the B-Z transition in DNA

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12 December 2020

Bipolar Localization of the Replication Origin Regions of Chromosomes in Vegetative and Sporulating Cells of B. subtilis

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12 December 2020

Dynamic, mitotic-like behavior of a bacterial protein required for accurate chromosome partitioning

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12 December 2020

Role of the mukB gene in chromosome and plasmid partition in Escherichia coli

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12 December 2020

Path of DNA within the Mu transpososome. Transposase interactions bridging two Mu ends and the enhancer trap five DNA supercoils

1 reference

12 December 2020

Kinetics of plasmid segregation in Escherichia coli

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12 December 2020

A phage P22 gene controlling integration of prophage

1 reference

12 December 2020

Electron microscopy of membrane-associated folded chromosomes of Escherichia coli

1 reference

12 December 2020

Electron microscopy of membrane-free folded chromosomes from Escherichia coli

1 reference

12 December 2020

Chromosome arrangement within a bacterium

1 reference

12 December 2020

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

1 reference

12 December 2020

10.1111/J.1365-2958.2005.04588.X

Identifiers

DOI

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1 August 2017

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1 August 2017

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