Protein 8-class secondary structure prediction using conditional neural fields (Q35926725)

11 August 2017

Protein 8-class secondary structure prediction using conditional neural fields (English)

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protein structure prediction

11 August 2017

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author name string

Zhiyong Wang

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11 August 2017

Feng Zhao

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11 August 2017

Jian Peng

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11 August 2017

Jinbo Xu

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11 August 2017

31 August 2011

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11 August 2017

1 reference

11 August 2017

1 reference

11 August 2017

1 reference

11 August 2017

3786-3792

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A Probabilistic Graphical Model for Ab Initio Folding

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Low-homology protein threading

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Mimicking the folding pathway to improve homology-free protein structure prediction.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Position-specific residue preference features around the ends of helices and strands and a novel strategy for the prediction of secondary structures.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Discriminative learning for protein conformation sampling.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Improved residue contact prediction using support vector machines and a large feature set.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

PISCES: a protein sequence culling server

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Protein secondary structure prediction based on position-specific scoring matrices

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

PHD: predicting one-dimensional protein structure by profile-based neural networks

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Prediction of protein secondary structure at better than 70% accuracy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Redefining the goals of protein secondary structure prediction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Combining evolutionary information and neural networks to predict protein secondary structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Protein folding dynamics: the diffusion-collision model and experimental data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Predicting the secondary structure of globular proteins using neural network models

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Protein secondary structure prediction with a neural network

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Improvements in protein secondary structure prediction by an enhanced neural network

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

Preorganized secondary structure as an important determinant of fast protein folding

2 October 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

Identifying sequence regions undergoing conformational change via predicted continuum secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

Protein Secondary Structure Prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

Protein secondary structure prediction based on an improved support vector machines approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

Secondary structure prediction with support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

A novel method for protein secondary structure prediction using dual-layer SVM and profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

Prediction of protein secondary structure by the hidden Markov model.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341732

On the limited memory BFGS method for large scale optimization

24 September 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100196

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100196

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

21805636

1 reference