Differential expression in RNA-seq: a matter of depth (Q35581592)

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scientific article published on 8 September 2011

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English	Differential expression in RNA-seq: a matter of depth	scientific article published on 8 September 2011

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scholarly article

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Europe PubMed Central

PubMed publication ID

21903743

retrieved

9 August 2017

title

Differential expression in RNA-seq: a matter of depth (English)

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Europe PubMed Central

PubMed publication ID

21903743

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9 August 2017

main subject

RNA sequencing

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based on heuristic

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RNA-Seq

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based on heuristic

inferred from title

author

Joaquín Dopazo

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3

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Europe PubMed Central

PubMed publication ID

21903743

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9 August 2017

Ana Conesa

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5

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Europe PubMed Central

PubMed publication ID

21903743

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9 August 2017

Sonia Tarazona

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Sonia Tarazona

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1

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Alberto Ferrer

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Alberto Ferrer

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4

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author name string

Fernando García-Alcalde

series ordinal

2

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stated in

Europe PubMed Central

PubMed publication ID

21903743

retrieved

9 August 2017

publication date

8 September 2011

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stated in

Europe PubMed Central

PubMed publication ID

21903743

retrieved

9 August 2017

published in

Genome Research

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Europe PubMed Central

PubMed publication ID

21903743

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9 August 2017

volume

21

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Europe PubMed Central

PubMed publication ID

21903743

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9 August 2017

issue

12

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Europe PubMed Central

PubMed publication ID

21903743

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9 August 2017

page(s)

2213-2223

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PubMed publication ID

21903743

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9 August 2017

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12 July 2018

From RNA-seq reads to differential expression results

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12 July 2018

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12 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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A scaling normalization method for differential expression analysis of RNA-seq data

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12 July 2018

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

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Gene ontology analysis for RNA-seq: accounting for selection bias

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The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs

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12 July 2018

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ChIP-seq: advantages and challenges of a maturing technology

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12 July 2018

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

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12 July 2018

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

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12 July 2018

Transcript length bias in RNA-seq data confounds systems biology

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12 July 2018

TopHat: discovering splice junctions with RNA-Seq

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Biogenesis of small RNAs in animals

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Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast

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12 July 2018

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

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12 July 2018

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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12 July 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

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12 July 2018

The transcriptional landscape of the yeast genome defined by RNA sequencing

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12 July 2018

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

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12 July 2018

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

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12 July 2018

Polyadenylation of ribosomal RNA in human cells

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PubMed Central

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12 July 2018

The transcriptional landscape of the mammalian genome

1 reference

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PubMed Central

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12 July 2018

RNA turnover: unexpected consequences of being tailed

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PubMed Central

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12 July 2018

Identifiers

DOI

10.1101/GR.124321.111

1 reference

stated in

Europe PubMed Central

PubMed publication ID

21903743

retrieved

9 August 2017

PMC publication ID

3227109

1 reference

stated in

Europe PubMed Central

PubMed publication ID

21903743

retrieved

9 August 2017

PubMed publication ID

21903743

1 reference

stated in

Europe PubMed Central

PubMed publication ID

21903743

retrieved

9 August 2017

ResearchGate publication ID

51635425

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