Principles of regulatory information conservation between mouse and human (Q35128631)

6 August 2017

title

Principles of regulatory information conservation between mouse and human (English)

1 reference

6 August 2017

Vasavi Sundaram

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Alan P Boyle

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Anshul Kundaje

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Axel Visel

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Ross C Hardison

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mouse ENCODE Consortium

2 references

ORCID Public Data File 2021

https://static-content.springer.com/esm/art%3A10.1038%2Fnature13985/MediaObjects/41586_2014_BFnature13985_MOESM102_ESM.pdf

7 March 2023

Len A Pennacchio

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Trupti Kawli

object named as

Trupti Kawli

1 reference

6 August 2017

Zhiping Weng

1 reference

6 August 2017

Xinqiong Yang

1 reference

6 August 2017

Nergiz Dogan

1 reference

6 August 2017

Yong Cheng

1 reference

6 August 2017

Zhihai Ma

1 reference

6 August 2017

Bong-Hyun Kim

1 reference

6 August 2017

Weisheng Wu

1 reference

6 August 2017

Philip Cayting

1 reference

6 August 2017

Xiaoyun Xing

1 reference

6 August 2017

Jingjing Li

1 reference

6 August 2017

Ghia Euskirchen

1 reference

6 August 2017

Shin Lin

1 reference

6 August 2017

Yiing Lin

1 reference

6 August 2017

Dorrelyn Patacsil

1 reference

6 August 2017

Cheryl A Keller

1 reference

6 August 2017

Belinda Giardine

1 reference

6 August 2017

mouse ENCODE Consortium

1 reference

6 August 2017

Ting Wang

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6 August 2017

Michael P Snyder

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6 August 2017

language of work or name

English

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publication date

1 November 2014

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6 August 2017

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6 August 2017

volume

515

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6 August 2017

issue

7527

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6 August 2017

page(s)

371-375

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Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Widespread contribution of transposable elements to the innovation of gene regulatory networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Sin3: insight into its transcription regulatory functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Cooperativity and rapid evolution of cobound transcription factors in closely related mammals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Annotation of functional variation in personal genomes using RegulomeDB

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

ChromHMM: automating chromatin-state discovery and characterization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

RAD21 cooperates with pluripotency transcription factors in the maintenance of embryonic stem cell identity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Variation in transcription factor binding among humans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

ChIP-seq accurately predicts tissue-specific activity of enhancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Divergence of transcription factor binding sites across related yeast species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

VISTA Enhancer Browser--a database of tissue-specific human enhancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Distribution and intensity of constraint in mammalian genomic sequence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Of mice and not men: differences between mouse and human immunology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Genomic strategies to identify mammalian regulatory sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Nuclease hypersensitive sites in chromatin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

CTCF and cohesin: linking gene regulatory elements with their targets

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

A map of the cis-regulatory sequences in the mouse genome

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Transposable elements have rewired the core regulatory network of human embryonic stem cells

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Design and analysis of ChIP-seq experiments for DNA-binding proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

A molecular basis for species differences in Thy-1 expression patterns

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343047

A comparative encyclopedia of DNA elements in the mouse genome

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13985

inferred from DOI database lookup

7 January 2021

based on heuristic

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13985

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE13985

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference