ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes (Q35086400)

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English	ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

title

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes (English)

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

main subject

automation

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inferred from title

author

Michael Chandler

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5

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

Alessandro Varani

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1

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Alessandro M Varani

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

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https://orcid.org/0000-0002-8876-3269

author name string

Patricia Siguier

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2

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

Edith Gourbeyre

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3

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Europe PubMed Central

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3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

Vincent Charneau

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4

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

publication date

28 March 2011

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

published in

Genome Biology

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3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

volume

12

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

issue

3

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Europe PubMed Central

PMC publication ID

3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

page(s)

R30

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3129680

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

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26 January 2020

cites work

Transposases are the most abundant, most ubiquitous genes in nature.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Using the Generic Genome Browser (GBrowse).

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Integrons: agents of bacterial evolution.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

ISfinder: the reference centre for bacterial insertion sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Circular genome visualization and exploration using CGView

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Shaping bacterial genomes with integrative and conjugative elements

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

The Bioperl toolkit: Perl modules for the life sciences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Insertion sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Microbial gene identification using interpolated Markov models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

Basic local alignment search tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

8 July 2018

The new IS1595 family, its relation to IS1 and the frontier between insertion sequences and transposons.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

27 September 2018

Comparative genome assembly.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

27 September 2018

IS231-MIC231 elements from Bacillus cereus sensu lato are modular

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129680

retrieved

27 September 2018

Identifiers

DOI

10.1186/GB-2011-12-3-R30

1 reference

stated in

Europe PubMed Central

PMC publication ID

3129680

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

retrieved

26 January 2020

PMC publication ID

3129680

1 reference

stated in

Europe PubMed Central

PMC publication ID

3129680

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

retrieved

26 January 2020

PubMed publication ID

21443786

1 reference

stated in

Europe PubMed Central

PMC publication ID

3129680

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21443786%20AND%20SRC:MED&resulttype=core&format=json

retrieved

26 January 2020

ResearchGate publication ID

50890876

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