Combinatorial binding predicts spatio-temporal cis-regulatory activity (Q35011328)

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English	Combinatorial binding predicts spatio-temporal cis-regulatory activity	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

title

Combinatorial binding predicts spatio-temporal cis-regulatory activity (English)

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

author

Charles Girardot

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Charles Girardot

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2

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Robert P Zinzen

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Robert P Zinzen

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1

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Julien Gagneur

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Julien Gagneur

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3

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Eileen E. M. Furlong

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5

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Eileen E M Furlong

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

author name string

Martina Braun

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4

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

language of work or name

English

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publication date

1 November 2009

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

published in

Nature

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

volume

462

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

issue

7269

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

page(s)

65-70

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

cites work

The myogenic regulatory gene Mef2 is a direct target for transcriptional activation by Twist during Drosophila myogenesis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide mapping of in vivo protein-DNA interactions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary origins of the vertebrate heart: Specification of the cardiac lineage in Ciona intestinalis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Zebrafish transgenic Enhancer TRAP line database (ZETRAP)

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FlyBase: enhancing Drosophila Gene Ontology annotations

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of a key regulatory region upstream of the Myf5 gene reveals multiple phases of myogenesis, orchestrated at each site by a combination of elements dispersed throughout the locus.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Computational models for neurogenic gene expression in the Drosophila embryo.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

twist: a myogenic switch in Drosophila.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Model-based deconvolution of genome-wide DNA binding

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The eve stripe 2 enhancer employs multiple modes of transcriptional synergy

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GAPWM: a genetic algorithm method for optimizing a position weight matrix

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of even-skipped stripe 2 in the Drosophila embryo

2 references

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNATURE08531

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Functional architecture and evolution of transcriptional elements that drive gene coexpression

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TileMap: create chromosomal map of tiling array hybridizations

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrating transcriptional and signalling networks during muscle development.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of the twist target gene tinman by modular cis-regulatory elements during early mesoderm development

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RSAT: regulatory sequence analysis tools

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene regulatory networks for development

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A core transcriptional network for early mesoderm development in Drosophila melanogaster

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

VISTA Enhancer Browser--a database of tissue-specific human enhancers

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

D-MEF2: a MADS box transcription factor expressed in differentiating mesoderm and muscle cell lineages during Drosophila embryogenesis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular integration of inductive and mesoderm-intrinsic inputs governs even-skipped enhancer activity in a subset of pericardial and dorsal muscle progenitors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of a conserved retinoic acid response element in rhombomere restriction of Hoxb-1.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive autoregulation of the Myocyte enhancer factor-2 myogenic control gene during somatic muscle development in Drosophila

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Drosophila MEF2, a transcription factor that is essential for myogenesis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ChIP-seq accurately predicts tissue-specific activity of enhancers

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A regulatory gene network that directs micromere specification in the sea urchin embryo.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear integration of positive Dpp signals, antagonistic Wg inputs and mesodermal competence factors during Drosophila visceral mesoderm induction.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ras pathway specificity is determined by the integration of multiple signal-activated and tissue-restricted transcription factors.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Developmental mechanisms and cis-regulatory codes.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tinman and bagpipe: two homeo box genes that determine cell fates in the dorsal mesoderm of Drosophila

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional regulation by the numbers: models.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of the myogenic regulatory gene Mef2 in cardiac, somatic, and visceral muscle cell lineages is regulated by a Tinman-dependent core enhancer.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

biniou (FoxF), a central component in a regulatory network controlling visceral mesoderm development and midgut morphogenesis in Drosophila

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19890324

retrieved

12 December 2020

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Identifiers

DOI

10.1038/NATURE08531

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Europe PubMed Central

PubMed publication ID

19890324

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5 August 2017

Dimensions Publication ID

1026284611

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PubMed publication ID

19890324

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19890324

retrieved

5 August 2017

ResearchGate publication ID

38067951

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