ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos (Q51580771)

7 April 2018

title

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos (English)

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7 April 2018

main subject

Drosophila melanogaster

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7 April 2018

Janus S Jakobsen

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Thomas Sandmann

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7 April 2018

publication date

1 January 2006

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7 April 2018

published in

Nature Protocols

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7 April 2018

volume

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7 April 2018

issue

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7 April 2018

page(s)

2839-2855

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7 April 2018

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

The specificity of protein-DNA crosslinking by formaldehyde: in vitro and in drosophila embryos

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Measurement of in vivo DNA binding by sequence-specific transcription factors using UV cross-linking.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Genome-wide identification of in vivo Drosophila Engrailed-binding DNA fragments and related target genes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Detection of specific sequences among DNA fragments separated by gel electrophoresis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Control of developmental regulators by Polycomb in human embryonic stem cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Core transcriptional regulatory circuitry in human embryonic stem cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

A high-resolution map of active promoters in the human genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Global position and recruitment of HATs and HDACs in the yeast genome.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Genomic analysis of heat-shock factor targets in Drosophila

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

A global map of p53 transcription-factor binding sites in the human genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

DNA microarray technologies for measuring protein-DNA interactions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Chromatin profiling, DamID and the emerging landscape of gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Chromatin immunoprecipitation and microarray-based analysis of protein location

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Design of studies using DNA microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Statistical design of reverse dye microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Microarray data normalization and transformation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

TileMap: create chromosomal map of tiling array hybridizations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Bioconductor: open software development for computational biology and bioinformatics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

TM4: a free, open-source system for microarray data management and analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Co-localization of Polycomb protein and GAGA factor on regulatory elements responsible for the maintenance of homeotic gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Development and validation of a T7 based linear amplification for genomic DNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

The UCSC Genome Browser Database

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

MAMMOT--a set of tools for the design, management and visualization of genomic tiling arrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

Drosophila MEF2 is a direct regulator of Actin57B transcription in cardiac, skeletal, and visceral muscle lineages.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.383

31 March 2020

Identifiers

DOI

10.1038/NPROT.2006.383

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7 April 2018

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7 April 2018