Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase (Q34696950)

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English	Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 August 2017

Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase (English)

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Europe PubMed Central

PubMed publication ID

4 August 2017

2

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Hirokazu Yano

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Europe PubMed Central

PubMed publication ID

4 August 2017

author name string

Masahiro Sota

1

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Europe PubMed Central

PubMed publication ID

4 August 2017

Akira Ono

3

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Europe PubMed Central

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4 August 2017

Ryo Miyazaki

4

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Europe PubMed Central

PubMed publication ID

4 August 2017

Hidenori Ishii

5

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Europe PubMed Central

PubMed publication ID

4 August 2017

Hiroyuki Genka

6

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Europe PubMed Central

PubMed publication ID

4 August 2017

Eva M Top

7

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Europe PubMed Central

PubMed publication ID

4 August 2017

Masataka Tsuda

8

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Europe PubMed Central

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4 August 2017

language of work or name

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publication date

1 June 2006

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Europe PubMed Central

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4 August 2017

Journal of Bacteriology

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Europe PubMed Central

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4 August 2017

188

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Europe PubMed Central

PubMed publication ID

4 August 2017

11

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Europe PubMed Central

PubMed publication ID

4 August 2017

4057-4067

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.

1 reference

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The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties

1 reference

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7 July 2018

The IncP island in the genome of Brucella suis 1330 was acquired by site-specific integration.

1 reference

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7 July 2018

The evolution of IncP catabolic plasmids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation

1 reference

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Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.

1 reference

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7 July 2018

Structure of Haloacetate-Catabolic IncP-1β Plasmid pUO1 and Genetic Mobility of Its Residing Haloacetate-Catabolic Transposon

1 reference

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The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

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7 July 2018

The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids.

1 reference

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7 July 2018

The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds

1 reference

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7 July 2018

Genomic islands and the evolution of catabolic pathways in bacteria

1 reference

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7 July 2018

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

1 reference

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7 July 2018

Conjugative transposons: the tip of the iceberg.

1 reference

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7 July 2018

Site-specific recombination system encoded by toluene catabolic transposon Tn4651

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Diversity in the serine recombinases

1 reference

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7 July 2018

Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain

1 reference

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7 July 2018

Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Artemis: sequence visualization and annotation

1 reference

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7 July 2018

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

The replication and stable-inheritance functions of IncP-9 plasmid pM3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

The integrase family of recombinase: organization and function of the active site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

The transposable elements resident on the plasmids of Pseudomonas putida strain H, Tn5501 and Tn5502, are cryptic transposons of the Tn3 family

1 reference

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7 July 2018

Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82.

1 reference

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7 July 2018

Organization and evolution of naphthalene catabolic pathways: sequence of the DNA encoding 2-hydroxychromene-2-carboxylate isomerase and trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from the NAH7 plasmid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Catabolic transposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas.

1 reference

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7 July 2018

Tn5401, a new class II transposable element from Bacillus thuringiensis

1 reference

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7 July 2018

Cloning and expression in Escherichia coli of the naphthalene degradation genes from plasmid NAH7.

1 reference

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7 July 2018

Plasmid gene organization: naphthalene/salicylate oxidation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid

1 reference

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7 July 2018

Transmissible Plasmid Coding Early Enzymes of Naphthalene Oxidation in Pseudomonas putida

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Regulation of naphthalene catabolic genes of plasmid NAH7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids

1 reference

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A correction in the nucleotide sequence of the Tn903 kanamycin resistance determinant in pUC4K.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Genetics of naphthalene catabolism in pseudomonads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Regulation of the nah and sal operons of plasmid NAH7: evidence for a new function in nahR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

7 July 2018

Homology between nucleotide sequences of promoter regions of nah and sal operons of NAH7 plasmid of Pseudomonas putida

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

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Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

1 reference

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7 July 2018

Nucleotide sequence of plasmid NAH7 gene nahR and DNA binding of the nahR product

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1 reference

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Bacterial aromatic ring-cleavage enzymes are classified into two different gene families.

1 reference

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Molecular analysis of a plasmid-encoded phenol hydroxylase from Pseudomonas CF600.

1 reference

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7 July 2018

Naphthalene degrading genes on plasmid NAH7 are on a defective transposon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482893

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Molecular mechanisms of genetic adaptation to xenobiotic compounds

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7 July 2018

Functional analysis of unique class II insertion sequence IS1071.

1 reference

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26 October 2018

A DNA polymerase V homologue encoded by TOL plasmid pWW0 confers evolutionary fitness on Pseudomonas putida under conditions of environmental stress

1 reference

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26 October 2018

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26 October 2018

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1 reference

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26 October 2018

Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida

1 reference

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Physical and genetic analysis of the Inc-W group plasmids R388, Sa, and R7K

1 reference

https://pubmed.ncbi.nlm.nih.gov/16707697

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Divergent evolution of chloroplast-type ferredoxins

1 reference

https://pubmed.ncbi.nlm.nih.gov/16707697

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobile gene cassettes and integrons in evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16707697

12 December 2020

based on heuristic

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Mercury resistance transposons of Gram-negative environmental bacteria and their classification

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Identifiers

10.1128/JB.00185-06

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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