The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. (Q40535883)

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25 October 2019

review article

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title

The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7765833%20AND%20SRC:MED&resulttype=core&format=json

25 October 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7765833%20AND%20SRC:MED&resulttype=core&format=json

25 October 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7765833%20AND%20SRC:MED&resulttype=core&format=json

25 October 2019

P A Williams

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21 September 2017

J R Sayers

series ordinal

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21 September 2017

language of work or name

English

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publication date

1 December 1994

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25 October 2019

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25 October 2019

volume

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25 October 2019

issue

3-4

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25 October 2019

page(s)

195-217

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Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes.

25 October 2019

cites work

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Location and sequence of the todF gene encoding 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in Pseudomonas putida F1

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In vitro analysis of polypeptide requirements of multicomponent phenol hydroxylase from Pseudomonas sp. strain CF600.

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cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily

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Promoter-upstream activator sequences are required for expression of the xylS gene and upper-pathway operon on the Pseudomonas TOL plasmid

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Plasmid gene organization: naphthalene/salicylate oxidation

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Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51

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Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates

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Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

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Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1.

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Identical resolvases are encoded by Pseudomonas TOL plasmids pWW53 and pDK1.

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Complete nucleotide sequence and polypeptide analysis of multicomponent phenol hydroxylase from Pseudomonas sp. strain CF600.

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Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0

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12 December 2020

Functional and evolutionary relationships among diverse oxygenases

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Bacterial aromatic ring-cleavage enzymes are classified into two different gene families.

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12 December 2020

On the Evolution of Biochemical Syntheses

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The metabolism of biphenyl byPseudomonas putida

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Divergent evolution of chloroplast-type ferredoxins

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12 December 2020

Recombination of the bph (Biphenyl) Catabolic Genes from Plasmid pWW100 and Their Deletion during Growth on Benzoate

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12 December 2020

Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas CF600.

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12 December 2020

Chromosomal location of TOL plasmid DNA in Pseudomonas putida

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Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707

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12 December 2020

The XylS/AraC family of regulators.

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12 December 2020

Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400

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12 December 2020

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12 December 2020

Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600

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12 December 2020

Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0.

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12 December 2020

Metabolism of naphthalene by the biphenyl-degrading bacterium Pseudomonas paucimobilis Q1

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12 December 2020

Identification of a new gene, tmoF, in the Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase

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12 December 2020

Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: cloning, analysis, and expression in soil bacteria

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12 December 2020

Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida

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12 December 2020

Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51

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12 December 2020

DNA sequence of the Acinetobacter calcoaceticus catechol 1,2-dioxygenase I structural gene catA: evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions

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12 December 2020

Excision and integration of degradative pathway genes from TOL plasmid pWW0.

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Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions

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12 December 2020

The lower pathway operon for benzoate catabolism in biphenyl-utilizing Pseudomonas sp. strain IC and the nucleotide sequence of the bphE gene for catechol 2,3-dioxygenase

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12 December 2020

Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products

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12 December 2020

The methane monooxygenase gene cluster of Methylococcus capsulatus (Bath).

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12 December 2020

Primary structure of xylene monooxygenase: similarities to and differences from the alkane hydroxylation system

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12 December 2020

Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation

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12 December 2020

Kinetic studies on benzyl alcohol dehydrogenase encoded by TOL plasmid pWWO. A member of the zinc-containing long chain alcohol dehydrogenase family.

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12 December 2020

Physical map of the aromatic amine and m-toluate catabolic plasmid pTDN1 in Pseudomonas putida: location of a unique meta-cleavage pathway

1 reference

12 December 2020

The meta cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes.

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12 December 2020

Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2.

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12 December 2020

Nucleotide sequence of metapyrocatechase I (catechol 2,3-oxygenase I) gene mpcI from Alcaligenes eutrophus JMP222.

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12 December 2020

Repeated sequences including RS1100 from Pseudomonas cepacia AC1100 function as IS elements

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12 December 2020

The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH

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12 December 2020

Molecular relationship of chromosomal genes encoding biphenyl/polychlorinated biphenyl catabolism: some soil bacteria possess a highly conserved bph operon

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12 December 2020

Nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene of Pseudomonas pseudoalcaligenes

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12 December 2020

DNA sequence determination of the TOL plasmid (pWW0) xylGFJ genes of Pseudomonas putida: implications for the evolution of aromatic catabolism

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12 December 2020

TOL plasmid pWW15 contains two nonhomologous, independently regulated catechol 2,3-oxygenase genes

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12 December 2020

A comprehensive set of sequence analysis programs for the VAX

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12 December 2020

Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5.

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12 December 2020

Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL, pWW0 and NAH7

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12 December 2020

Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases

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12 December 2020

Genetic organization and regulation of a meta cleavage pathway for catechols produced from catabolism of toluene, benzene, phenol, and cresols by Pseudomonas pickettii PKO1

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12 December 2020

The presence of two complete homologous meta pathway operons on TOL plasmid pWW53.

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12 December 2020

Nucleotide sequencing and characterization of the genes encoding benzene oxidation enzymes of Pseudomonas putida

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12 December 2020

Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas

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12 December 2020

Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution

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12 December 2020

Three different 2,3-dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6.

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12 December 2020

Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO.

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12 December 2020

Comparison of the meta pathway operons on NAH plasmid pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance

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12 December 2020

Naphthalene degrading genes on plasmid NAH7 are on a defective transposon

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12 December 2020

Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon

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12 December 2020

A comparison of the multiple alleles of xylS carried by TOL plasmids pWW53 and pDK1 and its implications for their evolutionary relationship

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12 December 2020

Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases

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12 December 2020

Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.

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12 December 2020

Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein.

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12 December 2020

Regulation of naphthalene catabolic genes of plasmid NAH7.

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12 December 2020

Nucleotide sequence of the metapyrocatechase II (catechol 2,3-oxygenase II) gene mpcII from Alcaligenes eutrophus JMP 222.

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12 December 2020

CLUSTAL V: improved software for multiple sequence alignment

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12 December 2020

Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences

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12 December 2020

Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli

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12 December 2020

Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators

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12 December 2020

Overproduction of the xylS gene product and activation of the xylDLEGF operon on the TOL plasmid

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12 December 2020

Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids

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12 December 2020

In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: a bacterial strategy to expand the substrate specificity of aromatic degradative pathways

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12 December 2020

Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid

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12 December 2020

The electron-transport proteins of hydroxylating bacterial dioxygenases

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12 December 2020

Apparent Fusion of the TOL Plasmid with the R91 Drug Resistance Plasmid in Pseudomonas aeruginosa

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12 December 2020

Isolation of TOL and RP4 recombinants by integrative suppression

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12 December 2020

Catabolism of pseudocumene and 3-ethyltoluene by Pseudomonas putida (arvilla) mt-2: evidence for new functions of the TOL (pWWO) plasmid

1 reference

12 December 2020

Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816.

1 reference

12 December 2020

Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region

1 reference

12 December 2020

The TOL plasmids: determinants of the catabolism of toluene and the xylenes.

1 reference

12 December 2020

Molecular mechanisms of genetic adaptation to xenobiotic compounds

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12 December 2020

Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzene

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12 December 2020