A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. (Q34611485)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16547113%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses (English)

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18 January 2020

0 references

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18 January 2020

Simon A A Travers

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18 January 2020

language of work or name

English

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publication date

17 March 2006

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18 January 2020

number of pages

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inferred from page(s)

published in

Genetics

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18 January 2020

volume

173

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18 January 2020

issue

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18 January 2020

page(s)

9-23

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Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes

18 January 2020

cites work

1 reference

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GroEL and the maintenance of bacterial endosymbiosis

7 July 2018

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A conservative test of genetic drift in the endosymbiotic bacterium Buchnera: slightly deleterious mutations in the chaperonin groEL.

7 July 2018

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Structural and functional analysis of the middle segment of hsp90: implications for ATP hydrolysis and client protein and cochaperone interactions

7 July 2018

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7 July 2018

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The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection

7 July 2018

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7 July 2018

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A Nucleotide-dependent molecular switch controls ATP binding at the C-terminal domain of Hsp90. N-terminal nucleotide binding unmasks a C-terminal binding pocket

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

7 July 2018

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Hsp90's secrets unfold: new insights from structural and functional studies

7 July 2018

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Hsp90 & Co. - a holding for folding

7 July 2018

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Molecular chaperones: the busy life of Hsp90.

7 July 2018

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Coevolving protein residues: maximum likelihood identification and relationship to structure.

7 July 2018

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Regulation of Hsp90 ATPase activity by tetratricopeptide repeat (TPR)-domain co-chaperones

7 July 2018

1 reference

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In vivo newly translated polypeptides are sequestered in a protected folding environment

7 July 2018

1 reference

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Multiple sequence alignment with Clustal X

7 July 2018

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A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

7 July 2018

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Differential interactions of p23 and the TPR-containing proteins Hop, Cyp40, FKBP52 and FKBP51 with Hsp90 mutants

7 July 2018

1 reference

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The hsp90-based chaperone system: involvement in signal transduction from a variety of hormone and growth factor receptors

7 July 2018

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Modeling the covarion hypothesis of nucleotide substitution.

7 July 2018

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7 July 2018

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Identification and structural characterization of the ATP/ADP-binding site in the Hsp90 molecular chaperone

7 July 2018

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Conformational variability in the refined structure of the chaperonin GroEL at 2.8 A resolution

7 July 2018

1 reference

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Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis

7 July 2018

1 reference

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How frequent are correlated changes in families of protein sequences?

7 July 2018

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7 July 2018

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Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

7 July 2018

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Compensating changes in protein multiple sequence alignments

7 July 2018

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The crystal structure of the bacterial chaperonin GroEL at 2.8 A

7 July 2018

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An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

7 July 2018

1 reference

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Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

7 July 2018

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Nucleotide sequence of the AIDS virus, LAV

7 July 2018

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Role of capsid precursor processing and myristoylation in morphogenesis and infectivity of human immunodeficiency virus type 1

7 July 2018

1 reference

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Excess nonsynonymous substitution of shared polymorphic sites among self-incompatibility alleles of Solanaceae

7 July 2018

1 reference

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The rapid generation of mutation data matrices from protein sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

Amino acid substitution matrices from protein blocks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

Detecting coevolving amino acid sites using Bayesian mutational mapping

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

A model-based approach for detecting coevolving positions in a molecule.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

Covarion structure in plastid genome evolution: a new statistical test

26 October 2018

1 reference

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SWAPSC: sliding window analysis procedure to detect selective constraints

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

Sampling properties of the bootstrap support in molecular phylogeny: influence of nonindependence among sites

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

ConSeq: the identification of functionally and structurally important residues in protein sequences

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461439

Widespread adaptive evolution in the human immunodeficiency virus type 1 genome

26 October 2018

1 reference

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Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments

26 October 2018

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Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences.

26 October 2018

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HIV-1 nomenclature proposal

26 October 2018

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Trigger factor and DnaK cooperate in folding of newly synthesized proteins.

26 October 2018

1 reference

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Effectiveness of correlation analysis in identifying protein residues undergoing correlated evolution.

26 October 2018

1 reference

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Characterization of a functionally important mobile domain of GroES.

26 October 2018

1 reference

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Tertiary Windowing to Detect Positive Diversifying Selection

26 October 2018

1 reference

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A Sliding Window-Based Method to Detect Selective Constraints in Protein-Coding Genes and Its Application to RNA Viruses

26 October 2018

1 reference

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Three-dimensional window analysis for detecting positive selection at structural regions of proteins

26 October 2018

1 reference

12 December 2020

The 2.4 A crystal structure of the bacterial chaperonin GroEL complexed with ATP gamma S

1 reference

12 December 2020

An analysis of simultaneous variation in protein structures

1 reference

12 December 2020

Evaluation of a novel method for the identification of coevolving protein residues

1 reference

12 December 2020

A method for detecting positive selection at single amino acid sites

1 reference

12 December 2020

10.1534/GENETICS.105.053249

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16547113%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16547113%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

16547113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16547113%20AND%20SRC:MED&resulttype=core&format=json