An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants. (Q34496399)

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19 February 2020

title

An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants (English)

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19 February 2020

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19 February 2020

Jamie A O'Rourke

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19 February 2020

S Samuel Yang

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19 February 2020

Susan S Miller

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19 February 2020

Bruna Bucciarelli

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19 February 2020

Junqi Liu

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19 February 2020

Ariel Rydeen

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19 February 2020

Claudia Uhde-Stone

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19 February 2020

Zheng Jin Tu

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19 February 2020

Deborah Allan

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19 February 2020

John W Gronwald

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19 February 2020

Carroll P Vance

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19 February 2020

language of work or name

English

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publication date

29 November 2012

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19 February 2020

number of pages

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inferred from page(s)

published in

Plant Physiology

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19 February 2020

volume

161

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19 February 2020

issue

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19 February 2020

page(s)

705-724

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Creative Commons Attribution 4.0 International

19 February 2020

start time

25 January 2021

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April 2022 Public Data File from Crossref

copyrighted

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The Role of MicroRNAs in Phosphorus Deficiency Signaling

27 October 2018

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Metabolic Adaptations of Phosphate-Starved Plants

27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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Root-Specific Reduction of Cytokinin Causes Enhanced Root Growth, Drought Tolerance, and Leaf Mineral Enrichment in Arabidopsis and Tobacco

27 October 2018

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27 October 2018

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Ethylene signalling is involved in regulation of phosphate starvation-induced gene expression and production of acid phosphatases and anthocyanin in Arabidopsis.

27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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27 October 2018

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MicroRNAs with macro-effects on plant stress responses

27 October 2018

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27 October 2018

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Regulation of phosphate starvation responses in higher plants

27 October 2018

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Dissecting the plant transcriptome and the regulatory responses to phosphate deprivation

27 October 2018

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27 October 2018

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27 October 2018

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The function of LPR1 is controlled by an element in the promoter and is independent of SUMO E3 Ligase SIZ1 in response to low Pi stress in Arabidopsis thaliana.

27 October 2018

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EIN3/EIL1 cooperate with PIF1 to prevent photo-oxidation and to promote greening of Arabidopsis seedlings

27 October 2018

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Gene expression profiles in rice roots under low phosphorus stress

27 October 2018

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Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing

27 October 2018

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The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis

27 October 2018

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27 October 2018

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Phosphate starvation responses and gibberellic acid biosynthesis are regulated by the MYB62 transcription factor in Arabidopsis

27 October 2018

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27 October 2018

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27 October 2018

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New insights into ferritin synthesis and function highlight a link between iron homeostasis and oxidative stress in plants.

27 October 2018

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27 October 2018

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27 October 2018

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Cytokinin regulates root meristem activity via modulation of the polar auxin transport

27 October 2018

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Plasma membrane H-ATPase-dependent citrate exudation from cluster roots of phosphate-deficient white lupin

27 October 2018

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Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots

27 October 2018

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Phosphate availability alters lateral root development in Arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor.

27 October 2018

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A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency

27 October 2018

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The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants

27 October 2018

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A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice

27 October 2018

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Ethylene insensitivity impedes a subset of responses to phosphorus deficiency in tomato and petunia.

27 October 2018

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Plant hormones and nutrient signaling.

27 October 2018

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Analyzing real-time PCR data by the comparative C(T) method

27 October 2018

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27 October 2018

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Transcript profiling of Zea mays roots reveals gene responses to phosphate deficiency at the plant- and species-specific levels.

27 October 2018

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Sugar signalling mediates cluster root formation and phosphorus starvation-induced gene expression in white lupin

27 October 2018

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

27 October 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

27 October 2018

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FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis

27 October 2018

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Flavonoids and auxin transport: modulators or regulators?

27 October 2018

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Cytokinins act directly on lateral root founder cells to inhibit root initiation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Phosphate starvation root architecture and anthocyanin accumulation responses are modulated by the gibberellin-DELLA signaling pathway in Arabidopsis

27 October 2018

1 reference

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Signalling mechanisms underlying the morphological responses of the root system to nitrogen in Arabidopsis thaliana

27 October 2018

1 reference

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The first genetic and comparative map of white lupin (Lupinus albus L.): identification of QTLs for anthracnose resistance and flowering time, and a locus for alkaloid content.

27 October 2018

1 reference

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Root tip contact with low-phosphate media reprograms plant root architecture

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Phosphorus stress in common bean: root transcript and metabolic responses

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

BHLH32 modulates several biochemical and morphological processes that respond to Pi starvation in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Differential effects of sucrose and auxin on localized phosphate deficiency-induced modulation of different traits of root system architecture in Arabidopsis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Direct control of shoot meristem activity by a cytokinin-activating enzyme

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

How do plants respond to nutrient shortage by biomass allocation?

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Nitrogen fixation by white lupin under phosphorus deficiency

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Cytokinin-mediated cell cycling arrest of pericycle founder cells in lateral root initiation of Arabidopsis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Phosphate deficiency promotes modification of iron distribution in Arabidopsis plants.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Characterization of low phosphorus insensitive mutants reveals a crosstalk between low phosphorus-induced determinate root development and the activation of genes involved in the adaptation of Arabidopsis to phosphorus deficiency

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Regulation of phosphate homeostasis by MicroRNA in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

A miRNA involved in phosphate-starvation response in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Transgenic proteoid roots of white lupin: a vehicle for characterizing and silencing root genes involved in adaptation to P stress

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

A link between citrate and proton release by proteoid roots of white lupin (Lupinus albus L.) grown under phosphorus-deficient conditions?

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

FRD3 controls iron localization in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

A systemic small RNA signaling system in plants.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Update on gibberellin signaling. A tale of the tall and the short

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

27 October 2018

PHOSPHATE ACQUISITION.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

The transcriptional control of plant responses to phosphate limitation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Regulation of root elongation under phosphorus stress involves changes in ethylene responsiveness

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Rapid induction of regulatory and transporter genes in response to phosphorus, potassium, and iron deficiencies in tomato roots. Evidence for cross talk and root/rhizosphere-mediated signals

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Arabidopsis disrupted in SQD2 encoding sulfolipid synthase is impaired in phosphate-limited growth

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Cluster roots--an underground adaptation for survival in extreme environments

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Molecular control of acid phosphatase secretion into the rhizosphere of proteoid roots from phosphorus-stressed white lupin

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Metabolic changes associated with cluster root development in white lupin (Lupinus albus L.): relationship between organic acid excretion, sucrose metabolism and energy status.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Gibberellins signal nuclear import of PHOR1, a photoperiod-responsive protein with homology to Drosophila armadillo

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Regulation of plant growth by cytokinin

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Phylogenetic relationships within cation transporter families of Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Influence of cytokinins on the expression of phosphate starvation responsive genes in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

CAP3: A DNA sequence assembly program

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Dissection of local and systemic transcriptional responses to phosphate starvation in Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561014

Mitochondrial beta-cyanoalanine synthase is essential for root hair formation in Arabidopsis thaliana

9 December 2018

1 reference

12 December 2020

Ferritins control interaction between iron homeostasis and oxidative stress in Arabidopsis

1 reference

12 December 2020

Functional diversity of arbuscular mycorrhizas extends to the expression of plant genes involved in P nutrition

1 reference

12 December 2020

Mining for nutrients - regulatory aspects of cluster root function and development

1 reference

12 December 2020

Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings

1 reference

12 December 2020

Phosphate homeostasis and root development in Arabidopsis are synchronized by the zinc finger transcription factor ZAT6

1 reference

12 December 2020

Excess cation uptake, and extrusion of protons and organic acid anions by Lupinus albus under phosphorus deficiency.

1 reference

12 December 2020

ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis

1 reference

12 December 2020

The effect of iron on the primary root elongation of Arabidopsis during phosphate deficiency

1 reference

12 December 2020

The FRD3 citrate effluxer promotes iron nutrition between symplastically disconnected tissues throughout Arabidopsis development

1 reference

12 December 2020

Histone H2A.Z regulates the expression of several classes of phosphate starvation response genes but not as a transcriptional activator

1 reference

12 December 2020

Citrate exudation from white lupin induced by phosphorus deficiency differs from that induced by aluminum

1 reference

12 December 2020

Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation

1 reference

12 December 2020

Phosphorus Stress-Induced Proteoid Roots Show Altered Metabolism in Lupinus albus

1 reference

12 December 2020

Root Carbon Dioxide Fixation by Phosphorus-Deficient Lupinus albus (Contribution to Organic Acid Exudation by Proteoid Roots)

1 reference

12 December 2020

Purification and characterization of glyoxylate synthetase from greening potato-tuber chloroplasts

1 reference

12 December 2020

Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana

1 reference

12 December 2020

Reactive oxygen species and root hairs in Arabidopsis root response to nitrogen, phosphorus and potassium deficiency

1 reference

12 December 2020

Phosphate-deficient oat replaces a major portion of the plasma membrane phospholipids with the galactolipid digalactosyldiacylglycerol

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.112.209254

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23197803%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PMC publication ID

3561014

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23197803%20AND%20SRC:MED&resulttype=core&format=json