Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data (Q34379264)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data	scientific article

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

title

Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

main subject

transcriptome

0 references

wheat

1 reference

based on heuristic

inferred from title

RNA sequencing

1 reference

based on heuristic

inferred from title

RNA-Seq

1 reference

based on heuristic

inferred from title

author name string

Jialei Duan

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

Chuan Xia

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

Guangyao Zhao

series ordinal

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

Jizeng Jia

series ordinal

4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

Xiuying Kong

series ordinal

5

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

language of work or name

English

0 references

publication date

14 August 2012

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

published in

BMC Genomics

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

volume

13

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

page(s)

392

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

cites work

De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in peanut (Arachis hypogaea L.).

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Transcriptome analysis of H2O2-treated wheat seedlings reveals a H2O2-responsive fatty acid desaturase gene participating in powdery mildew resistance

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

The Pfam protein families database

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Scaffolding pre-assembled contigs using SSPACE

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

De novo assembly and analysis of RNA-seq data.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Optimization of de novo transcriptome assembly from next-generation sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

De novo transcriptome assembly with ABySS.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

PlantGDB: a resource for comparative plant genomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

The TIGR Plant Transcript Assemblies database

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

GeneWise and Genomewise

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

BLAT—The BLAST-Like Alignment Tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

retrieved

6 July 2018

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing.

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1186%2F1471-2164-13-392

retrieved

21 January 2018

Identifiers

DOI

10.1186/1471-2164-13-392

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

PMC publication ID

3485621

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

PubMed publication ID

22891638

1 reference

stated in

Europe PubMed Central

PubMed publication ID

22891638

retrieved

1 August 2017

ResearchGate publication ID

230670097

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34379264&oldid=1740276942"