A three-dimensional topology of complex I inferred from evolutionary correlations. (Q34362913)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22857522%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

A three-dimensional topology of complex I inferred from evolutionary correlations (English)

1 reference

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9 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22857522%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Philip R Kensche

1 reference

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9 February 2020

Isabel Duarte

series ordinal

1 reference

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9 February 2020

publication date

3 August 2012

1 reference

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9 February 2020

published in

BMC Structural Biology

1 reference

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9 February 2020

volume

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9 February 2020

page(s)

1 reference

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Evolutionary rate covariation reveals shared functionality and coexpression of genes

9 February 2020

cites work

1 reference

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Direct-coupling analysis of residue coevolution captures native contacts across many protein families

6 July 2018

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6 July 2018

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Mutations in the gene encoding C8orf38 block complex I assembly by inhibiting production of the mitochondria-encoded subunit ND1

6 July 2018

1 reference

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Structure of the membrane domain of respiratory complex I

6 July 2018

1 reference

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A scaffold of accessory subunits links the peripheral arm and the distal proton-pumping module of mitochondrial complex I

6 July 2018

1 reference

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Evolution of respiratory complex I: "supernumerary" subunits are present in the alpha-proteobacterial enzyme

6 July 2018

1 reference

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The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

6 July 2018

1 reference

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New views on strand asymmetry in insect mitochondrial genomes

6 July 2018

1 reference

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Acyl-CoA dehydrogenase 9 is required for the biogenesis of oxidative phosphorylation complex I

6 July 2018

1 reference

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BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

6 July 2018

1 reference

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The architecture of respiratory complex I

6 July 2018

1 reference

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MidA is a putative methyltransferase that is required for mitochondrial complex I function

6 July 2018

1 reference

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Disentangling direct from indirect co-evolution of residues in protein alignments

6 July 2018

1 reference

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Structure and function of mitochondrial supercomplexes

6 July 2018

1 reference

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High-resolution protein complexes from integrating genomic information with molecular simulation

6 July 2018

1 reference

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Human ind1, an iron-sulfur cluster assembly factor for respiratory complex I

6 July 2018

1 reference

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Mutations in NDUFAF3 (C3ORF60), encoding an NDUFAF4 (C6ORF66)-interacting complex I assembly protein, cause fatal neonatal mitochondrial disease

6 July 2018

1 reference

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Mitochondrial proteome evolution and genetic disease.

6 July 2018

1 reference

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Identification of direct residue contacts in protein-protein interaction by message passing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

6 July 2018

Complex fate of paralogs

1 reference

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Mutation of C20orf7 disrupts complex I assembly and causes lethal neonatal mitochondrial disease

6 July 2018

1 reference

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6 July 2018

1 reference

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Subunits of mitochondrial complex I exist as part of matrix- and membrane-associated subcomplexes in living cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Subunit analysis of bovine heart complex I by reversed-phase high-performance liquid chromatography, electrospray ionization-tandem mass spectrometry, and matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

A mitochondrial protein compendium elucidates complex I disease biology

6 July 2018

1 reference

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Assembly of mitochondrial complex I and defects in disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

The iron-sulphur protein Ind1 is required for effective complex I assembly

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Recent developments in the MAFFT multiple sequence alignment program

6 July 2018

1 reference

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Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method

6 July 2018

1 reference

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High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

6 July 2018

1 reference

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C6ORF66 is an assembly factor of mitochondrial complex I

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Supramolecular organization of the respiratory chain in Neurospora crassa mitochondria

6 July 2018

1 reference

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Human mitochondrial complex I assembly: a dynamic and versatile process

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Human CIA30 is involved in the early assembly of mitochondrial complex I and mutations in its gene cause disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Specificity in protein interactions and its relationship with sequence diversity and coevolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Analysis of the assembly profiles for mitochondrial- and nuclear-DNA-encoded subunits into complex I

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Investigation of the complex I assembly chaperones B17.2L and NDUFAF1 in a cohort of CI deficient patients

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Cytosolic signaling protein Ecsit also localizes to mitochondria where it interacts with chaperone NDUFAF1 and functions in complex I assembly

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Database resources of the National Center for Biotechnology Information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Deviations from Chargaff's second parity rule in organellar DNA Insights into the evolution of organellar genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Adaptive selection of mitochondrial complex I subunits during primate radiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Energy converting NADH:quinone oxidoreductase (complex I).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

An integrated view of protein evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Mutation pressure and the evolution of organelle genomic architecture

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

A molecular chaperone for mitochondrial complex I assembly is mutated in a progressive encephalopathy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Towards a proteome-scale map of the human protein–protein interaction network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Structure, function, and formation of biological iron-sulfur clusters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (Complex I).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Protein homology detection by HMM-HMM comparison

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

The oxidized subunit B8 from human complex I adopts a thioredoxin fold

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Oxidative damage to mitochondrial complex I due to peroxynitrite: identification of reactive tyrosines by mass spectrometry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

The nuclear encoded subunits of complex I from bovine heart mitochondria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Prediction of protein residue contacts with a PDB-derived likelihood matrix.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Definition of the nuclear encoded protein composition of bovine heart mitochondrial complex I. Identification of two new subunits.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

GRIM-19, a cell death regulatory gene product, is a subunit of bovine mitochondrial NADH:ubiquinone oxidoreductase (complex I)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

EMBOSS: the European Molecular Biology Open Software Suite

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Profile hidden Markov models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Involvement of two novel chaperones in the assembly of mitochondrial NADH:Ubiquinone oxidoreductase (complex I).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Redox components and structure of the respiratory NADH:ubiquinone oxidoreductase (complex I).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Measuring genome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Mitochondrial NADH:ubiquinone oxidoreductase (complex I): proximity of the subunits of the flavoprotein and the iron-sulfur protein subcomplexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

How frequent are correlated changes in families of protein sequences?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

NADH:ubiquinone oxidoreductase from bovine heart mitochondria. cDNA sequences of the import precursors of the nuclear-encoded 39 kDa and 42 kDa subunits

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Codon usage is imposed by the gene location in the transcription unit

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Characterization of the 9.5-kDa ubiquinone-binding protein of NADH:ubiquinone oxidoreductase (complex I) from Neurospora crassa

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Characterization of assembly intermediates of NADH:ubiquinone oxidoreductase (complex I) accumulated in Neurospora mitochondria by gene disruption

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Analysis of the subunit composition of complex I from bovine heart mitochondria

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Functional modules and structural basis of conformational coupling in mitochondrial complex I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Human mitochondrial complex I assembles through the combination of evolutionary conserved modules: a framework to interpret complex I deficiencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Coevolution study of mitochondria respiratory chain proteins: Toward the understanding of protein–protein interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Identification and characterization of a common set of complex I assembly intermediates in mitochondria from patients with complex I deficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

The 9.8 kDa subunit of complex I, related to bacterial Na(+)-translocating NADH dehydrogenases, is required for enzyme assembly and function in Neurospora crassa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

In silico two-hybrid system for the selection of physically interacting protein pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-12-19

Contribution of each complex of the mitochondrial respiratory chain in the generation of the proton-motive force*.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

A single determinant dominates the rate of yeast protein evolution

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Disruption of the nuclear gene encoding the 20.8-kDa subunit of NADH: ubiquinone reductase of Neurospora mitochondria.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436739

Resolution of the Membrane Domain of Bovine Complex I into Subcomplexes: Implications for the Structural Organization of the Enzyme

27 October 2018

1 reference

12 December 2020

Coevolution predicts direct interactions between mtDNA-encoded and nDNA-encoded subunits of oxidative phosphorylation complex i

1 reference

12 December 2020

ClustalW-MPI: ClustalW analysis using distributed and parallel computing

1 reference

12 December 2020

Role of the Conserved Cysteine Residues of the 11.5 kDa Subunit in Complex I Catalytic Properties

1 reference

12 December 2020

Tight binding of NADPH to the 39-kDa subunit of complex I is not required for catalytic activity but stabilizes the multiprotein complex

1 reference

12 December 2020

Identifiers

DOI

10.1186/1472-6807-12-19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22857522%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22857522%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

PubMed publication ID

22857522

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22857522%20AND%20SRC:MED&resulttype=core&format=json