Plasmids foster diversification and adaptation of bacterial populations in soil (Q34186192)

31 July 2017

title

Plasmids foster diversification and adaptation of bacterial populations in soil (English)

1 reference

31 July 2017

Kornelia Smalla

1 reference

31 July 2017

Holger Heuer

1 reference

31 July 2017

publication date

26 March 2012

1 reference

FEMS Microbiology Reviews

31 July 2017

published in

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

31 July 2017

page(s)

1083-1104

1 reference

A type IV-secretion-like system is required for conjugative DNA transport of broad-host-range plasmid pIP501 in gram-positive bacteria

31 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The role of antibiotics and antibiotic resistance in nature

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Evolution of microbial virulence: the benefits of stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established α, β and δ sub-groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

All IncP-1 plasmid subgroups, including the novel epsilon subgroup, are prevalent in the influent of a Danish wastewater treatment plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

SOS response promotes horizontal dissemination of antibiotic resistance genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Increased pollution-induced bacterial community tolerance to sulfadiazine in soil hotspots amended with artificial root exudates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The world of subinhibitory antibiotic concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Expanding the soil antibiotic resistome: exploring environmental diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Horizontal gene transfer and the origin of species: lessons from bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Acclimation of subsurface microbial communities to mercury

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Diversity of 3-chloroaniline and 3,4-dichloroaniline degrading bacteria isolated from three different soils and involvement of their plasmids in chloroaniline degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Antibiotic-resistant soil bacteria in transgenic plant fields

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The evolution of IncP catabolic plasmids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

21 January 2018

Bistability in bacteria

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Stochastic gene expression in switching environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Computational improvements reveal great bacterial diversity and high metal toxicity in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Replication functions of new broad host range plasmids isolated from polluted soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Competition favours reduced cost of plasmids to host bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The fate of laterally transferred genes: life in the fast lane to adaptation or death

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Sequence and analysis of the 46.6-kb plasmid pA1 from Sphingomonas sp. A1 that corresponds to the typical IncP-1beta plasmid backbone without any accessory gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Conjugal transfer and mobilization capacity of the completely sequenced naphthalene plasmid pNAH20 from multiplasmid strain Pseudomonas fluorescens PC20.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Soft sweeps: molecular population genetics of adaptation from standing genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Gentamicin resistance genes in environmental bacteria: prevalence and transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1beta group without any accessory genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Frequent conjugative transfer accelerates adaptation of a broad-host-range plasmid to an unfavorable Pseudomonas putida host

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Variation in permissiveness for broad-host-range plasmids among genetically indistinguishable isolates of Dickeya sp. from a small field plot

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Distribution, diversity, and potential mobility of extrachromosomal elements related to the Bacillus anthracis pXO1 and pXO2 virulence plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Rapid pathway evolution facilitated by horizontal gene transfers across prokaryotic lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Molecular classification of IncP-9 naphthalene degradation plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Horizontal gene transfer accelerates genome innovation and evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Soil health in agricultural systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

PCR primers for detection and characterisation of IncP-9 plasmids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S. meliloti strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Molecular and population analyses of a recombination event in the catabolic plasmid pJP4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Coevolution of antibiotic production and counter-resistance in soil bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Balancing robustness and evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plant-microbe association for rhizoremediation of chloronitroaromatic pollutants with Comamonas sp. strain CNB-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Nucleotide sequence of plasmid pCNB1 from comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

A global view of antibiotic resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmid transfer from Pseudomonas putida to the indigenous bacteria on alfalfa sprouts: characterization, direct quantification, and in situ location of transconjugant cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Mathematical modeling of evolution of horizontally transferred genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The nature and dynamics of bacterial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Lateral gene transfer and the nature of bacterial innovation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Sequence, assembly and analysis of pX01 and pX02.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Conjugal properties of the Sinorhizobium meliloti plasmid mobilome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Quantitative and qualitative microscale distribution of bacteria in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Uncultured soil bacteria are a reservoir of new antibiotic resistance genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Pyrosequencing enumerates and contrasts soil microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Characterization of the metabolically modified heavy metal-resistant Cupriavidus metallidurans strain MSR33 generated for mercury bioremediation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Toward a census of bacteria in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Diversity of IncP-9 plasmids of Pseudomonas

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Heterogeneous selection in a spatially structured environment affects fitness tradeoffs of plasmid carriage in pseudomonads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Determining the effects of a spatially heterogeneous selection pressure on bacterial population structure at the sub-millimetre scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Exogenous isolation of antibiotic resistance plasmids from piggery manure slurries reveals a high prevalence and diversity of IncQ-like plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Increased abundance of IncP-1beta plasmids and mercury resistance genes in mercury-polluted river sediments: first discovery of IncP-1beta plasmids with a complex mer transposon as the sole accessory element

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Horizontal gene transfer: perspectives at a crossroads of scientific disciplines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmid introduction in metal-stressed, subsurface-derived microcosms: plasmid fate and community response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

21 January 2018

Mobility of plasmids.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Predicting plasmid promiscuity based on genomic signature

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Stochastic gene expression in fluctuating environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Mechanisms of, and barriers to, horizontal gene transfer between bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Complete sequence of the IncPbeta plasmid R751: implications for evolution and organisation of the IncP backbone

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmid capture by the Bacillus thuringiensis conjugative plasmid pXO16.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Mobile elements as a combination of functional modules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Ecological and molecular maintenance strategies of mobile genetic elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Prevalence of streptomycin-resistance genes in bacterial populations in European habitats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Biological diversity of prokaryotic type IV secretion systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Medical consequences of antibiotic use in agriculture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Interactions and self-organization in the soil-microbe complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Tillage, habitat space and function of soil microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

Spatial and resource factors influencing high microbial diversity in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2012.00337.X

10.1111/J.1574-6976.2012.00337.X

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

1 reference