De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis (Q21266643)

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19 August 2022

Darcie E Ryan

Darcie E

Ryan

1 reference

Dimensions

1044520464

19 August 2022

Alan E Pepper

series ordinal

author given names

Alan E

author last names

Pepper

1 reference

Dimensions

1044520464

CDD: a Conserved Domain Database for the functional annotation of proteins

19 August 2022

language of work or name

English

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publication date

2014

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888

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cites work

1 reference

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19 March 2017

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19 March 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

19 March 2017

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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

19 March 2017

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

19 March 2017

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Cellular and molecular biology of the aquaporin water channels

19 March 2017

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The cellular biology of proton-motive force generation by V-ATPases

19 March 2017

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Dinoflagellate phylogeny revisited: using ribosomal proteins to resolve deep branching dinoflagellate clades

19 March 2017

1 reference

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ABySS: a parallel assembler for short read sequence data

19 March 2017

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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

7 April 2017

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

7 April 2017

1 reference

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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

7 April 2017

1 reference

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CD-Search: protein domain annotations on the fly

7 April 2017

1 reference

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TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes.

7 April 2017

1 reference

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Osmotic stress triggers toxin production by the dinoflagellate Karenia brevis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

The toxic dinoflagellate Karenia brevis encodes novel type I-like polyketide synthases containing discrete catalytic domains.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Spliced leader RNA trans-splicing in dinoflagellates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Gene expression in Florida red tide dinoflagellate Karenia brevis: analysis of an expressed sequence tag library and development of DNA microarray

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Those amazing dinoflagellate chromosomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Aquaporin water channels--from atomic structure to clinical medicine

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Structure and function of voltage‐gated sodium channels

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Evolutionary Relationships Among the Eukaryotic Crown Taxa Taking into Account Site-to-Site Rate Variation in 18S rRNA

12 September 2017

1 reference

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Aquaporin CHIP: the archetypal molecular water channel

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Structural DNA and genetically active DNA in dinoflagellate chromosomes

12 September 2017

1 reference

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Brevetoxins: unique polyether dinoflagellate toxins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Structure and function of vacuolar class of ATP-driven proton pumps

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203930

Ciguatoxins and brevetoxins, neurotoxic polyether compounds active on sodium channels

12 September 2017

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-888

Polyketide synthase genes from marine dinoflagellates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-888

Spliced leader RNA-mediated trans-splicing in a dinoflagellate, Karenia brevis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-888

Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-888

Depolarizing action of a red-tide dinoflagellate brevetoxin on axonal membranes

21 January 2018

1 reference

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Involvement of the Plasma Membrane ATPase in the Osmoregulatory Mechanism of the Alga Dunaliella salina

29 November 2018

1 reference

12 December 2020

Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms

1 reference

12 December 2020

Aquaporins: Phylogeny, Structure, and Physiology of Water Channels

1 reference

12 December 2020

Isolation and Properties of Isolated Nuclei from the Florida Red Tide DinoflagellateGymnodinium breve(Davis)1

1 reference

12 December 2020

Genomic understanding of dinoflagellates

1 reference

12 December 2020

Variation in brevetoxin and brevenal content among clonal cultures of Karenia brevis may influence bloom toxicity

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-15-888

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