Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome (Q21203752)

object named as

Gustavo Caetano-Anollés

Gustavo

Caetano-Anollés

1 reference

17 August 2022

Kyung Mo Kim

Kyung Mo

Kim

1 reference

17 August 2022

author name string

Manfredo J Seufferheld

Manfredo J

Seufferheld

1 reference

17 August 2022

James Whitfield

James

Whitfield

1 reference

17 August 2022

Alejandro Valerio

Alejandro

Valerio

1 reference

The proteomic complexity and rise of the primordial ancestor of diversified life

17 August 2022

language of work or name

English

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publication date

2011

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0 references

1 reference

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

19 March 2017

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Rethinking early Earth phosphorus geochemistry

19 March 2017

1 reference

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The Pfam protein families database

19 March 2017

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Dendroscope: An interactive viewer for large phylogenetic trees

19 March 2017

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The bacterial cytoskeleton

19 March 2017

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Isolation and Characterization of a Methylotrophic Marine Methanogen, Methanococcoides methylutens gen. nov., sp. nov

19 March 2017

1 reference

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Inorganic polyphosphate in the origin and survival of species

19 March 2017

1 reference

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On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells

19 March 2017

1 reference

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Microcompartments in prokaryotes: carboxysomes and related polyhedra

19 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

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Ancient Invasions: From Endosymbionts to Organelles

19 March 2017

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SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

19 March 2017

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Prokaryotic origin of the actin cytoskeleton

19 March 2017

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

19 March 2017

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MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

19 March 2017

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The rapid generation of mutation data matrices from protein sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world

19 March 2017

1 reference

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Analysis of ancient sequence motifs in the H-PPase family

19 March 2017

1 reference

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Photosynthetic eukaryotes unite: endosymbiosis connects the dots

19 March 2017

1 reference

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Experimental models of primitive cellular compartments: encapsulation, growth, and division

19 March 2017

1 reference

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SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Inorganic polyphosphate: a molecule of many functions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

A thermostable vacuolar-type membrane pyrophosphatase from the archaeon Pyrobaculum aerophilum: implications for the origins of pyrophosphate-energized pumps

19 March 2017

1 reference

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The nature of the last universal ancestor and the root of the tree of life, still open questions

19 March 2017

1 reference

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Eukaryotic evolution, changes and challenges

19 March 2017

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Control of cell shape in bacteria: helical, actin-like filaments in Bacillus subtilis

7 April 2017

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Alternative photophosphorylation, inorganic pyrophosphate synthase and inorganic pyrophosphate

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Evolution of acidocalcisomes and their role in polyphosphate storage and osmoregulation in eukaryotic microbes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

The origin, evolution and structure of the protein world.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Role of polyphosphates in microbial adaptation to extreme environments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Arrangements in the modular evolution of proteins.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Prediction of membrane-protein topology from first principles

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Membrane protein structure: prediction versus reality.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

The SUPERFAMILY database in 2007: families and functions

12 September 2017

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The emerging structure of vacuolar ATPases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Genomics and the irreducible nature of eukaryote cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Acidocalcisomes - conserved from bacteria to man.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Complex spliceosomal organization ancestral to extant eukaryotes

12 September 2017

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Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation

12 September 2017

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How did cells get their size?

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

The protein storage vacuole: a unique compound organelle.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

The origin of cellular life

12 September 2017

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Polyphosphate and phosphate pump.

12 September 2017

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The nature of the last universal common ancestor

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Characterization of a vacuolar pyrophosphatase in Trypanosoma brucei and its localization to acidocalcisomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Early evolution: prokaryotes, the new kids on the block

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Inorganic polyphosphate and the induction of rpoS expression

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Inorganic polyphosphate: toward making a forgotten polymer unforgettable

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Did the last common ancestor have a biological membrane?

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198990

Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans

27 September 2017

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Symbiotic theory of the origin of eukaryotic organelles; criteria for proof

27 September 2017

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TOPCONS: consensus prediction of membrane protein topology

27 September 2017

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Volcanic production of polyphosphates and its relevance to prebiotic evolution

30 May 2018

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Acidocalcisomes and a vacuolar H+-pyrophosphatase in malaria parasites

30 May 2018

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"Killer" Impacts and Life's Origins

30 May 2018

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Acidocalcisomes in Toxoplasma gondii tachyzoites

30 May 2018

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Ca2+/H+ exchange in acidic vacuoles of Trypanosoma brucei

30 May 2018

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Plastid endosymbiosis, genome evolution and the origin of green plants.

30 May 2018

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Identification of organelles in bacteria similar to acidocalcisomes of unicellular eukaryotes

21 January 2018

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Inorganic polyphosphate interacts with ribosomes and promotes translation fidelity in vitro and in vivo.

21 January 2018

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The polyphosphate bodies of Chlamydomonas reinhardtii possess a proton-pumping pyrophosphatase and are similar to acidocalcisomes

21 January 2018

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Presence of a plant-like proton-pumping pyrophosphatase in acidocalcisomes of Trypanosoma cruzi

21 January 2018

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A vacuolar-type H+-pyrophosphatase governs maintenance of functional acidocalcisomes and growth of the insect and mammalian forms of Trypanosoma brucei

21 January 2018

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Copper tolerance of the thermoacidophilic archaeon Sulfolobus metallicus: possible role of polyphosphate metabolism

21 January 2018

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GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

21 January 2018

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Evolutionary appearance of H+-translocating pyrophosphatases.

21 January 2018

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An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes

21 January 2018

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Structure is three to ten times more conserved than sequence-A study of structural response in protein cores

21 January 2018

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Proton-pyrophosphatase and polyphosphate in acidocalcisome-like vesicles from oocytes and eggs of Periplaneta americana

29 November 2018

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Inorganic polyphosphate stimulates lon-mediated proteolysis of nucleoid proteins in Escherichia coli

29 November 2018

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29 November 2018

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The H(+)-pyrophosphatase of Rhodospirillum rubrum is predominantly located in polyphosphate-rich acidocalcisomes

29 November 2018

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29 November 2018

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Exploring the interplay of stability and function in protein evolution: new methods further elucidate why protein stability is necessarily so tenuous and stability-increasing mutations compromise biological function

29 November 2018

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12 December 2020

Reversibility of H+-ATPase and H+-pyrophosphatase in tonoplast vesicles from maize coleoptiles and seeds

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Characterization of isolated acidocalcisomes of Trypanosoma cruzi

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12 December 2020

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Gene trees and species trees are not the same

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Identifiers

DOI

10.1186/1745-6150-6-50

0 references