TOPCONS: consensus prediction of membrane protein topology (Q42159014)

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scientific article published on 8 May 2009

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Language	Label	Description	Also known as
English	TOPCONS: consensus prediction of membrane protein topology	scientific article published on 8 May 2009

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

title

TOPCONS: consensus prediction of membrane protein topology (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

main subject

membrane protein

1 reference

based on heuristic

inferred from title

author

Arne Elofsson

series ordinal

4

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

author name string

Andreas Bernsel

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

Håkan Viklund

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

Aron Hennerdal

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

publication date

8 May 2009

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

published in

Nucleic Acids Research

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

volume

37

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

issue

Web Server issue

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stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

page(s)

W465-8

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Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

cites work

Prediction of membrane-protein topology from first principles

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

Improving the accuracy of transmembrane protein topology prediction using evolutionary information

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

A combined transmembrane topology and signal peptide prediction method

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

The HMMTOP transmembrane topology prediction server

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

29 May 2018

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

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29 May 2018

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

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29 May 2018

Basic local alignment search tool

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

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29 May 2018

Molecular code for transmembrane-helix recognition by the Sec61 translocon

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

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17 August 2018

ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

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17 August 2018

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

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17 August 2018

Reliability measures for membrane protein topology prediction algorithms.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

17 August 2018

A consensus procedure for predicting the location of alpha-helical transmembrane segments in proteins.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703981

retrieved

17 August 2018

Consensus predictions of membrane protein topology

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FNAR%2FGKP363

retrieved

21 January 2018

FlyBase: genes and gene models

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Crossref

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https://api.crossref.org/works/10.1093%2FNAR%2FGKP363

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21 January 2018

MemO: a consensus approach to the annotation of a protein's membrane organization

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19429891

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKP363

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

DBLP publication ID

journals/nar/BernselVHE09

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

2703981

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

PubMed publication ID

19429891

1 reference

stated in

Europe PubMed Central

PMC publication ID

2703981

retrieved

17 October 2017

ResearchGate publication ID

24415551

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