Discovery of active enhancers through bidirectional expression of short transcripts (Q21184027)

Dimensions

16 August 2022

Michael F Melgar

Michael F

Melgar

1 reference

Dimensions

1050928883

16 August 2022

Praveen Sethupathy

series ordinal

author given names

Praveen

author last names

Sethupathy

1 reference

Dimensions

1050928883

Histone H3K27ac separates active from poised enhancers and predicts developmental state

16 August 2022

language of work or name

English

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publication date

2011

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R113

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

19 March 2017

1 reference

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Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS

19 March 2017

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DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells

19 March 2017

1 reference

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CTCF: master weaver of the genome

19 March 2017

1 reference

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Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

19 March 2017

1 reference

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RNA exosome depletion reveals transcription upstream of active human promoters

19 March 2017

1 reference

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Model-based analysis of ChIP-Seq (MACS)

19 March 2017

1 reference

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RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Nascent transcript sequencing visualizes transcription at nucleotide resolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Mapping and analysis of chromatin state dynamics in nine human cell types

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

7 April 2017

1 reference

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An extensive network of coupling among gene expression machines

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

A unique chromatin signature uncovers early developmental enhancers in humans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Widespread transcription at neuronal activity-regulated enhancers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Divergent transcription from active promoters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

RNA polymerase is poised for activation across the genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

A high-resolution map of active promoters in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Paused RNA polymerase II as a developmental checkpoint

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Enhancer function: new insights into the regulation of tissue-specific gene expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Promoter proximal pausing and the control of gene expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Detection and removal of biases in the analysis of next-generation sequencing reads

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Does CTCF mediate between nuclear organization and gene expression?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

A wave of nascent transcription on activated human genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Transcriptional regulatory circuits: predicting numbers from alphabets

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Coupling and coordination in gene expression processes: a systems biology view

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Transcriptional regulation and the role of diverse coactivators in animal cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Deciphering gene expression regulatory networks.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Splicing-dependent RNA polymerase pausing in yeast

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334599

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R113

21 January 2018

The meaning of pausing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22082242

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2011-12-11-R113

1 reference

release_kjptgc76krcifatuyc7skbazaq

1050928883

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kjptgc76krcifatuyc7skbazaq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

PubMed publication ID

22082242

1 reference