Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila (Q36214878)

12 August 2017

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila (English)

1 reference

12 August 2017

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Karen Adelman

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Sergei Nechaev

1 reference

12 August 2017

David C Fargo

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12 August 2017

Gilberto dos Santos

series ordinal

1 reference

12 August 2017

Liwen Liu

series ordinal

1 reference

12 August 2017

Yuan Gao

series ordinal

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12 August 2017

language of work or name

English

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publication date

10 December 2009

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12 August 2017

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12 August 2017

327

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12 August 2017

5963

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12 August 2017

335-338

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Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

The RNA polymerase II core promoter - the gateway to transcription.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

RNA polymerase is poised for activation across the genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

A chromatin landmark and transcription initiation at most promoters in human cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Transcriptional pausing caused by NELF plays a dual role in regulating immediate-early expression of the junB gene

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Thermodynamic and kinetic modeling of transcriptional pausing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

A negative elongation factor for human RNA polymerase II inhibits the anti-arrest transcript-cleavage factor TFIIS.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Promoting elongation with transcript cleavage stimulatory factors

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

A highly purified RNA polymerase II elongation control system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Promoter clearance by RNA polymerase II is an extended, multistep process strongly affected by sequence

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Promoter-proximal pausing by RNA polymerase II in vitro: transcripts shorter than 20 nucleotides are not capped

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Postinitiation transcriptional control in Drosophila melanogaster

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Stability of Drosophila RNA polymerase II elongation complexes in vitro

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Structure of transcription elongation complexes in vivo

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435875

In vitro transcription from the adenovirus 2 major late promoter utilizing templates truncated at promoter-proximal sites

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20007866

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nature of the nucleosomal barrier to RNA polymerase II

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20007866

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1181421

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

20007866

1 reference