Primer3--new capabilities and interfaces (Q29614816)

From Wikidata

Jump to navigation Jump to search

scientific article (publication date: August 2012)

edit

Language	Label	Description	Also known as
English	Primer3--new capabilities and interfaces	scientific article (publication date: August 2012)

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

title

Primer3--new capabilities and interfaces (English)

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

author

Brant C. Faircloth

series ordinal

5

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

Maido Remm

series ordinal

6

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

Steven G. Rozen

series ordinal

7

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

author name string

Andreas Untergasser

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

Ioana Cutcutache

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

Triinu Koressaar

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

Jian Ye

series ordinal

4

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

language of work or name

English

1 reference

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

publication date

22 June 2012

1 reference

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

published in

Nucleic Acids Research

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

volume

40

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

issue

15

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

page(s)

e115

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

start time

4 October 2016

1 reference

stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Database resources of the National Center for Biotechnology Information

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

BatchPrimer3: a high throughput web application for PCR and sequencing primer design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

Primer3Plus, an enhanced web interface to Primer3

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

SNP Cutter: a comprehensive tool for SNP PCR-RFLP assay design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

The thermodynamics of DNA structural motifs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

MethPrimer: designing primers for methylation PCRs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

Primer3 on the WWW for general users and for biologist programmers

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

30 April 2017

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Homolog-specific PCR primer design for profiling splice variants

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

PrimerIdent: A web based tool for conserved primer design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Optimus Primer: A PCR enrichment primer design program for next-generation sequencing of human exonic regions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

A high-throughput pipeline for the design of real-time PCR signatures.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

MPprimer: a program for reliable multiplex PCR primer design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

RDML: structured language and reporting guidelines for real-time quantitative PCR data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

SNPbox: web-based high-throughput primer design with an eye for repetitive sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Genome-scale probe and primer design with PRIMEGENS.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

OLIGO 7 primer analysis software

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Physical principles and visual-OMP software for optimal PCR design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

PrimerZ: streamlined primer design for promoters, exons and human SNPs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

GENOMEMASKER package for designing unique genomic PCR primers

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

SNPbox: a modular software package for large-scale primer design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Thermodynamic parameters for DNA sequences with dangling ends

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

Thermodynamics of internal C.T mismatches in DNA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

3 June 2018

WebSat--a web software for microsatellite marker development

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

26 November 2018

EasyExonPrimer: automated primer design for exon sequences.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

26 November 2018

Primaclade--a flexible tool to find conserved PCR primers across multiple species.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

26 November 2018

The PCR suite.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

26 November 2018

AcePrimer: automation of PCR primer design based on gene structure

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

26 November 2018

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424584

retrieved

26 November 2018

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/22730293

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/22730293

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PRIMERSELECT. Primer and probe design

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/22730293

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/22730293

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/22730293

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKS596

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154106

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

OpenCitations bibliographic resource ID

154106

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154106

PMC publication ID

3424584

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154106

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

PubMed publication ID

22730293

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22730293

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

154106

stated in

Europe PubMed Central

PMC publication ID

3424584

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22730293%20AND%20SRC:MED&resulttype=core&format=json

retrieved

6 February 2020

ResearchGate publication ID

228064205

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q29614816&oldid=1867109467"