A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions (Q27486213)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14569004%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

title

A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions (English)

1 reference

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20 December 2019

1 reference

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20 December 2019

P C Joost Haasnoot

1 reference

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20 December 2019

John F Bol

series ordinal

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20 December 2019

language of work or name

English

0 references

publication date

20 October 2003

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

20 December 2019

number of pages

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inferred from page(s)

published in

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20 December 2019

volume

100

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20 December 2019

issue

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20 December 2019

page(s)

12596-12600

1 reference

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The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges

20 December 2019

cites work

1 reference

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Molecular recognition of pyr mRNA by the Bacillus subtilis attenuation regulatory protein PyrR

20 March 2017

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Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function

20 March 2017

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A potential RNA drug target in the hepatitis C virus internal ribosomal entry site

20 March 2017

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Structure and dynamics of the iron responsive element RNA: implications for binding of the RNA by iron regulatory binding proteins

20 March 2017

1 reference

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Role of the alfalfa mosaic virus methyltransferase-like domain in negative-strand RNA synthesis

20 March 2017

1 reference

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Pregenomic RNA is required for efficient incorporation of pol polyprotein into foamy virus capsids

29 September 2017

1 reference

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Mutational analysis of the 5' leader region of simian foamy virus type 1.

29 September 2017

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The European small subunit ribosomal RNA database

29 September 2017

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29 September 2017

RNA-protein complexes

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Alfalfa mosaic virus and ilarviruses: involvement of coat protein in multiple steps of the replication cycle

29 September 2017

1 reference

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A model of the iron responsive element RNA hairpin loop structure determined from NMR and thermodynamic data

29 September 2017

1 reference

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Structure and function of the human immunodeficiency virus leader RNA.

29 September 2017

1 reference

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Early and late functions of alfalfa mosaic virus coat protein can be mutated separately

29 September 2017

1 reference

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The importance of a single G in the hairpin loop of the iron responsive element (IRE) in ferritin mRNA for structure: an NMR spectroscopy study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

The encapsidation signal on the hepatitis B virus RNA pregenome forms a stem-loop structure that is critical for its function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

An RNA stem-loop structure directs hepatitis B virus genomic RNA encapsidation

29 September 2017

1 reference

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trans activation of human immunodeficiency virus type 1 is sequence specific for both the single-stranded bulge and loop of the trans-acting-responsive hairpin: a quantitative analysis.

29 September 2017

1 reference

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Structural analysis of the 5' domain of the HeLa 18S ribosomal RNA by chemical and enzymatic probing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

An experimental study ofSaccharomyces cerevisiaeU3 snRNA conformation in solution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

Fitting peptides into the RNA world

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

Internal loop/bulge and hairpin loop of the iron-responsive element of ferritin mRNA contribute to maximal iron regulatory protein 2 binding and translational regulation in the iso-iron-responsive element/iso-iron regulatory protein family

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240663

A conformational switch at the 3' end of a plant virus RNA regulates viral replication.

2 June 2018

1 reference

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Characterization of sequences controlling the synthesis of alfalfa mosaic virus subgenomic RNA in vivo

2 June 2018

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HIV-1 tat trans-activation requires the loop sequence within tar.

2 June 2018

1 reference

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Replication of an incomplete alfalfa mosaic virus genome in plants transformed with viral replicase genes

2 June 2018

1 reference

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Role of the alfalfa mosaic virus movement protein and coat protein in virus transport

2 June 2018

1 reference

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Structural features of an RNA containing the CUGGGA loop of the human immunodeficiency virus type 1 trans-activation response element

21 January 2018

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An NMR study of the HIV-1 TAR element hairpin

21 January 2018

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Specific HIV-1 TAR RNA loop sequence and functional groups are required for human cyclin T1-Tat-TAR ternary complex formation

21 January 2018

1 reference

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An mRNA loop/bulge in the ferritin iron-responsive element forms in vivo and Was detected by radical probing with Cu-1,10-phenantholine and iron regulatory protein footprinting

21 January 2018

1 reference

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The lonepair triloop: a new motif in RNA structure

21 January 2018

1 reference

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Optimal sequence and structure of iron-responsive elements. Selection of RNA stem-loops with high affinity for iron regulatory factor

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14569004

inferred from PubMed ID database lookup

12 December 2020

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Identifiers

DOI

10.1073/PNAS.2135413100

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20 December 2019

0 references

1 reference

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20 December 2019

PubMed publication ID

14569004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14569004%20AND%20SRC:MED&resulttype=core&format=json