Regulatory Principles Governing Tissue Specificity of Developmental Enhancers (Q27013802)

title

Regulatory Principles Governing Tissue Specificity of Developmental Enhancers (English)

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Katrina M Olson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Michael S Levine

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

language of work or name

1 reference

2015

1 reference

Cold Spring Harbor Symposia on Quantitative Biology

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

27-32

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

Tunicates and not cephalochordates are the closest living relatives of vertebrates

9 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Migratory neuronal progenitors arise from the neural plate borders in tunicates

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Point mutations in a distant sonic hedgehog cis-regulator generate a variable regulatory output responsible for preaxial polydactyly

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Development of five digits is controlled by a bipartite long-range cis-regulator

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

DNA-binding specificities of human transcription factors

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Early chordate origins of the vertebrate second heart field

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Diversity and complexity in DNA recognition by transcription factors

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Suboptimization of developmental enhancers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

The pre-vertebrate origins of neurogenic placodes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Identification of a rudimentary neural crest in a non-vertebrate chordate

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Rapid evolutionary rewiring of a structurally constrained eye enhancer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Shadow enhancers foster robustness of Drosophila gastrulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Shadow enhancers as a source of evolutionary novelty

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Multiple functions of a Zic-like gene in the differentiation of notochord, central nervous system and muscle in Ciona savignyi embryos.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

The weak, fine-tuned binding of ubiquitous transcription factors to the II-2 enhancer contributes to its T cell-restricted activity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Low affinity binding site clusters confer hox specificity and regulatory robustness.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Transcriptional regulation of a pair-rule stripe in Drosophila.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

31 May 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

Ephrin signaling establishes asymmetric cell fates in an endomesoderm lineage of the Ciona embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

Neural tube patterning by Ephrin, FGF and Notch signaling relays

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

FGF signaling establishes the anterior border of the Ciona neural tube

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027227

Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4970742

FGF8/17/18 functions together with FGF9/16/20 during formation of the notochord in Ciona embryos

28 November 2018

1 reference

12 December 2020

Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors

1 reference

12 December 2020

Electroporation of Transgenic DNAs in the Sea Squirt Ciona

1 reference

12 December 2020

Induction of anterior neural fates in the ascidian Ciona intestinalis

1 reference

12 December 2020

10.1101/SQB.2015.80.027227

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

release_3nxr5u5xxfdtfff4cdbj75ezpq

9 June 2020

Fatcat ID

0 references

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27325706%20AND%20SRC:MED&resulttype=core&format=json