Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers (Q37183697)

18 August 2017

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers (English)

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18 August 2017

1 reference

18 August 2017

Emma K Farley

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Wei Zhang

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Katrina M Olson

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18 August 2017

Michael S Levine

series ordinal

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18 August 2017

language of work or name

English

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publication date

6 May 2016

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Proceedings of the National Academy of Sciences of the United States of America

18 August 2017

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18 August 2017

113

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18 August 2017

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18 August 2017

6508-6513

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Suboptimization of developmental enhancers

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

SoxB1-driven transcriptional network underlies neural-specific interpretation of morphogen signals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Rapid evolutionary rewiring of a structurally constrained eye enhancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Shadow enhancers foster robustness of Drosophila gastrulation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Shadow enhancers as a source of evolutionary novelty

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Direct activation by Ets and Zic is required for initial expression of the Brachyury gene in the ascidian notochord.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Brinker is a sequence-specific transcriptional repressor in the Drosophila embryo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Dual requirement for the EcR/USP nuclear receptor and the dGATAb factor in an ecdysone response in Drosophila melanogaster

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Multiple functions of a Zic-like gene in the differentiation of notochord, central nervous system and muscle in Ciona savignyi embryos.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Low affinity binding site clusters confer hox specificity and regulatory robustness.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Transcriptional regulation of a pair-rule stripe in Drosophila.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

FGF signaling establishes the anterior border of the Ciona neural tube

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Neural tube patterning by Ephrin, FGF and Notch signaling relays

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Ephrin signaling establishes asymmetric cell fates in an endomesoderm lineage of the Ciona embryo

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Regulatory blueprint for a chordate embryo.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1605085113

FGF8/17/18 functions together with FGF9/16/20 during formation of the notochord in Ciona embryos

21 January 2018

1 reference

12 December 2020

Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors

1 reference

12 December 2020

Electroporation of Transgenic DNAs in the Sea Squirt Ciona

1 reference

12 December 2020

Induction of anterior neural fates in the ascidian Ciona intestinalis

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1605085113

1 reference

18 August 2017

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18 August 2017

PubMed publication ID

27155014

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