Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci (Q36076247)

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Language	Label	Description	Also known as
English	Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci	scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci (English)

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

author name string

Zsolt Boldogköi

1

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

publication date

5 July 2012

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Frontiers in Genetics

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

3

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

122

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Tissue-specific alternative polyadenylation at the imprinted gene Mest regulates allelic usage at Copg2

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Functional consequences of bidirectional promoters

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Gene regulation by sense-antisense overlap of polyadenylation signals.

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Bidirectional promoters generate pervasive transcription in yeast

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

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Divergent transcription from active promoters

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Most mammalian mRNAs are conserved targets of microRNAs

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

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Chance and necessity in chromosomal gene distributions

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Human gene organization driven by the coordination of replication and transcription.

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

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Transcriptional collision between convergent genes in budding yeast.

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Antisense transcripts in the human genome

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Evolutionary analyses of the human genome

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Comparative genomics of the eukaryotes

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Varicella-zoster virus DNA polymerase and major DNA-binding protein genes have overlapping divergent promoters.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

2 October 2017

Herpes simplex virus latency-associated transcript is a stable intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

2 October 2017

Herpes simplex virus IE63 acts at the posttranscriptional level to stimulate viral mRNA 3' processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

2 October 2017

RNA synthesis in cells infected with herpes simplex virus. X. Properties of viral symmetric transcripts and of double-stranded RNA prepared from them

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

2 October 2017

Dark Matter RNA: Existence, Function, and Controversy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Ripples from neighbouring transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

A putative latency promoter/enhancer (P(LAT2)) region of pseudorabies virus contains a virulence determinant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Concerted action of the transcriptional activators REB1, RAP1, and GCR1 in the high-level expression of the glycolytic gene TPI.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Large and small subunits of the Aujeszky's disease virus ribonucleotide reductase: nucleotide sequence and putative structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Constitutive and conditional suppression of exogenous and endogenous genes by anti-sense RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

The 5' and 3' limits of transcription in the pseudorabies virus latency associated transcription unit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Regulated expression of the mouse gamma 2b Ig H chain gene is influenced by polyA site order and strength

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

Homeotic gene Antennapedia mRNA contains 5'-noncoding sequences that confer translational initiation by internal ribosome binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

11 July 2018

The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

Effects of deletion of the early protein 0 gene of pseudorabies virus on the overall viral gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

The relationship between DNA replication and human genome organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

Genetically timed, activity-sensor and rainbow transsynaptic viral tools.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

The evolution of genetic networks by non-adaptive processes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

Inhibiting transcription of chromosomal DNA with antigene peptide nucleic acids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

Imprinted expression of the Igf2r gene depends on an intronic CpG island.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

Localization of herpes simplex virus in the trigeminal and olfactory systems of the mouse central nervous system during acute and latent infections by in situ hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389743

23 September 2018

G and C accumulation at silent positions of codons produces additional ORFs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22783276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of regulatory functions of the HSV-1 immediate-early protein ICP22

1 reference

https://pubmed.ncbi.nlm.nih.gov/22783276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post-transcriptional control during crustacean evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/22783276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3389/FGENE.2012.00122

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

ResearchGate publication ID

0 references

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