Nucleosome organization in the Drosophila genome. (Q37326387)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18408708%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

title

Nucleosome organization in the Drosophila genome (English)

1 reference

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Histone H2A variant Dmel_CG5499

5 January 2020

main subject

Drosophila

0 references

1 reference

GOA release 2020-03-11

1 reference

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5 January 2020

Travis N Mavrich

1 reference

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5 January 2020

Cizhong Jiang

1 reference

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5 January 2020

Ilya P Ioshikhes

1 reference

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5 January 2020

Xiaoyong Li

1 reference

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5 January 2020

Bryan J Venters

1 reference

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5 January 2020

Sara J Zanton

1 reference

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5 January 2020

Lynn P Tomsho

1 reference

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5 January 2020

Ji Qi

1 reference

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5 January 2020

Robert L Glaser

1 reference

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5 January 2020

Stephan C Schuster

1 reference

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5 January 2020

David S Gilmour

1 reference

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5 January 2020

B Franklin Pugh

1 reference

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5 January 2020

language of work or name

English

0 references

publication date

13 April 2008

1 reference

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5 January 2020

1 reference

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5 January 2020

volume

453

1 reference

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5 January 2020

issue

7193

1 reference

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5 January 2020

page(s)

358-362

1 reference

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NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila

5 January 2020

cites work

1 reference

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

6 September 2017

1 reference

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Imaging Drosophila gene activation and polymerase pausing in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

RNA polymerase is poised for activation across the genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

A high-resolution atlas of nucleosome occupancy in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Global analysis of patterns of gene expression during Drosophila embryogenesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

A chromatin landmark and transcription initiation at most promoters in human cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

High-resolution profiling of histone methylations in the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Histone replacement marks the boundaries of cis-regulatory domains

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Temporal regulation of foregut development by HTZ-1/H2A.Z and PHA-4/FoxA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Control of transcription through intragenic patterns of nucleosome composition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

The replacement histone H2A.Z in a hyperacetylated form is a feature of active genes in the chicken

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Genome-wide map of nucleosome acetylation and methylation in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Genome sequencing in microfabricated high-density picolitre reactors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Genome-scale identification of nucleosome positions in S. cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

The role of histone H2Av variant replacement and histone H4 acetylation in the establishment of Drosophila heterochromatin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

The MTE, a new core promoter element for transcription by RNA polymerase II.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Anything else but GAGA: a nonhistone protein complex reshapes chromatin structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

A highly purified RNA polymerase II elongation control system

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Cluster analysis and display of genome-wide expression patterns

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Disruption of downstream chromatin directed by a transcriptional activator

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Isolation of cDNAs encoding the Drosophila GAGA transcription factor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Transcription factors that activate the Ultrabithorax promoter in developmentally staged extracts

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Genome-scale profiling of histone H3.3 replacement patterns.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Histone H2A.Z is widely but nonrandomly distributed in chromosomes of Drosophila melanogaster

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2735122

Sequence structure of human nucleosome DNA

2 September 2018

1 reference

12 December 2020

Nucleosome positions predicted through comparative genomics

1 reference

12 December 2020

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

1 reference

12 December 2020

The location of nucleosomes in chromatin: specific or statistical?

1 reference

12 December 2020

Activator-dependent regulation of transcriptional pausing on nucleosomal templates

1 reference

12 December 2020

Binding of trithorax and Polycomb proteins to the bithorax complex: dynamic changes during early Drosophila embryogenesis

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

A high-resolution map of transcription in the yeast genome

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

Model-based analysis of tiling-arrays for ChIP-chip.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

A high-resolution map of active promoters in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNATURE06929

7 January 2021

Identifiers

DOI

10.1038/NATURE06929

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18408708%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

5 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18408708%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

PubMed publication ID

18408708

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18408708%20AND%20SRC:MED&resulttype=core&format=json