Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae). (Q35216150)

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English	Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae).	scientific article

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25078531%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae) (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25078531%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Populus balsamifera

object named as

Populus balsamifera

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

object named as

Salicaceae

1 reference

based on heuristic

inferred from title

Populus trichocarpa

object named as

P. trichocarpa

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25078531%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25078531%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Quentin C. B. Cronk

5

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Europe PubMed Central

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11 March 2020

author name string

Natalia Kolosova

3

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Europe PubMed Central

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11 March 2020

Carl J Douglas

4

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11 March 2020

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31 July 2014

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11 March 2020

New Phytologist

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11 March 2020

204

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11 March 2020

3

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11 March 2020

693-703

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11 March 2020

The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

An extinct genus of Salicaceae based on twigs with attached flowers, fruits, and foliage from the Eocene Green River Formation of Utah and Colorado, USA

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

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Plant eco-devo: the potential of poplar as a model organism

1 reference

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Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests

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https://api.crossref.org/works/10.1111%2FNPH.12956

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The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes.

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BEAST: Bayesian evolutionary analysis by sampling trees

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Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants

1 reference

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Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA.

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1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

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Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

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HyPhy: hypothesis testing using phylogenies

1 reference

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A random effects branch-site model for detecting episodic diversifying selection.

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Deep sympatric mtDNA divergence in the autumnal moth (Epirrita autumnata)

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Taller plants have lower rates of molecular evolution

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Pleistocene speciation in the genus Populus (salicaceae)

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Incongruence between chloroplast and species phylogenies in Eucalyptus subgenus Monocalyptus (Myrtaceae).

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Detecting individual sites subject to episodic diversifying selection

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https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Microevolutionary processes generate phylogenomic discordance at ancient divergences

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

jModelTest: phylogenetic model averaging

1 reference

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21 January 2018

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

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21 January 2018

Testing hypotheses for genealogical discordance in a rainforest lizard

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https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa

1 reference

https://api.crossref.org/works/10.1111%2FNPH.12956

21 January 2018

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

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Rates of molecular evolution are linked to life history in flowering plants

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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EST data suggest that poplar is an ancient polyploid

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21 January 2018

The biogeography of mitochondrial and nuclear discordance in animals

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

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Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

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21 January 2018

PAML 4: phylogenetic analysis by maximum likelihood

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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Mitochondrial DNA under siege in avian phylogeography

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A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies

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Natural poplar hybrids from southern Alberta. I. Continuous variation for foliar characteristics

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Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

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