Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates (Q21563526)

21 June 2017

title

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates (English)

1 reference

21 June 2017

1 reference

1 reference

Martin Wu

Martin

1 reference

31 August 2022

Andrew J Alverson

Andrew J

Alverson

1 reference

31 August 2022

David E McCauley

David E

McCauley

1 reference

21 June 2017

Douglas R

Taylor

Douglas R Taylor

1 reference

21 June 2017

Daniel B

Sloan

Daniel B Sloan

1 reference

21 June 2017

John P Chuckalovcak

John P

Chuckalovcak

1 reference

21 June 2017

Jeffrey D Palmer

series ordinal

author given names

Jeffrey D

author last names

Palmer

1 reference

21 June 2017

language of work or name

English

0 references

publication date

17 January 2012

1 reference

21 June 2017

1 reference

21 June 2017

1 reference

21 June 2017

1 reference

21 June 2017

page(s)

e1001241

1 reference

Creative Commons Attribution 4.0 International

21 June 2017

start time

17 January 2012

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

19 March 2017

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7 April 2017

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7 April 2017

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Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

12 September 2017

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Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin

12 September 2017

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Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber

12 September 2017

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The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats

12 September 2017

1 reference

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Systematically fragmented genes in a multipartite mitochondrial genome.

12 September 2017

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Did genetic drift drive increases in genome complexity?

12 September 2017

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Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia.

12 September 2017

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Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Paternal leakage and heteroplasmy of mitochondrial genomes in Silene vulgaris: evidence from experimental crosses

12 September 2017

1 reference

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Recombination and the maintenance of plant organelle genome stability.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

The consequences of genetic drift for bacterial genome complexity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Nucleotide diversity of the Chlamydomonas reinhardtii plastid genome: addressing the mutational-hazard hypothesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Silene as a model system in ecology and evolution

12 September 2017

1 reference

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The effect of breeding system on polymorphism in mitochondrial genes of Silene.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Reticulate or tree-like chloroplast DNA evolution in Sileneae (Caryophyllaceae)?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Historical range expansion determines the phylogenetic diversity introduced during contemporary species invasion

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Variable populations within variable populations: quantifying mitochondrial heteroplasmy in natural populations of the gynodioecious plant Silene vulgaris

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Streamlining and simplification of microbial genome architecture

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Mutation pressure and the evolution of organelle genomic architecture

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Genome size: does bigger mean worse?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Mitochondrial genomes: anything goes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Parallels in genome evolution in mitochondria and bacterial symbionts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Mutational equilibrium model of genome size evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Deletional bias and the evolution of bacterial genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Reducing the genome size of organelles favours gene transfer to the nucleus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Evolution of the mitochondrial rps3 intron in perennial and annual angiosperms and homology to nad5 intron 1.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Molecular evolution of angiosperm mitochondrial introns and exons

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae)

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Physicochemical characterization of mitochondrial DNA from pea leaves

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Molecular analysis of the linear 2.3 kb plasmid of maize mitochondria: apparent capture of tRNA genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Biased gene conversion, copy number, and apparent mutation rate differences within chloroplast and bacterial genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

12 September 2017

1 reference

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Reaching for the ring: the study of mitochondrial genome structure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Skeletal DNA and the evolution of genome size

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Physical and gene mapping of chloroplast DNA from Atriplex triangularis and Cucumis sativa

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

30 May 2018

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The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260318

Genome size is negatively correlated with effective population size in ray-finned fish

30 May 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Population size and genome size in fishes: a closer look

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Nonadaptive evolution of mitochondrial genome size

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Mitochondrial heteroplasmy and paternal leakage in natural populations of Silene vulgaris, a gynodioecious plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Mitochondrial genes are found on minicircle DNA molecules in the mesozoan animal Dicyema

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Single gene circles in dinoflagellate chloroplast genomes

21 January 2018

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Phage T4-like intermediates of DNA replication and recombination in the mitochondria of the higher plant Chenopodium album (L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

eFloras: New Directions for Online Floras Exemplified by the Flora of China Project

21 January 2018

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RNA editing in gymnosperms and its impact on the evolution of the mitochondrial coxI gene

21 January 2018

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Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris

21 January 2018

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Hybrid origins and homoploid reticulate evolution within Heliosperma (Sileneae, Caryophyllaceae)--a multigene phylogenetic approach with relative dating.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Web-based primer design for single nucleotide polymorphism analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Comment on "The Origins of Genome Complexity"

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

Tripartite structure of the Brassica campestris mitochondrial genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001241

The End of the Circle for Yeast Mitochondrial DNA

21 January 2018

1 reference

12 December 2020

Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence

1 reference

12 December 2020

Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis

1 reference

12 December 2020

Evolutionary rate variation at multiple levels of biological organization in plant mitochondrial DNA

1 reference

12 December 2020

Evolution of reproductive systems in the genus Silene

1 reference

12 December 2020

Evolutionary rates of insertion and deletion in noncoding nucleotide sequences of primates

1 reference

12 December 2020

Elimination of deleterious mutations in plastid genomes by gene conversion

1 reference

12 December 2020

Don't forget the ancestral polymorphisms

1 reference

12 December 2020

Testing genome complexity

1 reference

12 December 2020

Evidence for paternal transmission and heteroplasmy in the mitochondrial genome of Silene vulgaris, a gynodioecious plant

1 reference

12 December 2020

10.1371/JOURNAL.PBIO.1001241

Identifiers

DOI

1 reference

OpenCitations bibliographic resource ID

21 June 2017

954033

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

954033

1 reference