Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution (Q34242790)

31 July 2017

title

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution (English)

1 reference

31 July 2017

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David P Bartel

1 reference

ORCID Public Data File 2021

31 July 2017

Igor Ulitsky

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author name string

Alena Shkumatava

series ordinal

1 reference

31 July 2017

Calvin H Jan

series ordinal

1 reference

31 July 2017

Hazel Sive

series ordinal

1 reference

31 July 2017

language of work or name

English

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publication date

1 December 2011

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31 July 2017

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31 July 2017

volume

147

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31 July 2017

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31 July 2017

page(s)

1537-1550

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lincRNAs act in the circuitry controlling pluripotency and differentiation

31 July 2017

cites work

1 reference

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6 July 2018

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Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

6 July 2018

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The sequence, structure and evolutionary features of HOTAIR in mammals

6 July 2018

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Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice

6 July 2018

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

6 July 2018

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Long non-coding RNAs and chromatin regulation

6 July 2018

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Locked nucleic acids (LNAs) reveal sequence requirements and kinetics of Xist RNA localization to the X chromosome

6 July 2018

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Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs

6 July 2018

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Long noncoding RNAs with enhancer-like function in human cells

6 July 2018

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The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

6 July 2018

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Mammalian microRNAs predominantly act to decrease target mRNA levels

6 July 2018

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A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

6 July 2018

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Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes

6 July 2018

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6 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 July 2018

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

6 July 2018

1 reference

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

6 July 2018

1 reference

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Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness

6 July 2018

1 reference

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Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain

6 July 2018

1 reference

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

6 July 2018

1 reference

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A primer for morpholino use in zebrafish.

6 July 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

6 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

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Long non-coding RNAs: insights into functions

6 July 2018

1 reference

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Differential chromatin marking of introns and expressed exons by H3K36me3.

6 July 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

6 July 2018

1 reference

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Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.

6 July 2018

1 reference

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Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia

6 July 2018

1 reference

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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

6 July 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

6 July 2018

1 reference

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X chromosome dosage compensation: how mammals keep the balance

6 July 2018

1 reference

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Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

6 July 2018

1 reference

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

6 July 2018

1 reference

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Vesicular glutamate transporter 3 is required for synaptic transmission in zebrafish hair cells.

6 July 2018

1 reference

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Specific expression of long noncoding RNAs in the mouse brain

6 July 2018

1 reference

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Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430.

6 July 2018

1 reference

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

High-resolution profiling of histone methylations in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

The transcriptional landscape of the mammalian genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Global identification of human transcribed sequences with genome tiling arrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

The steroid receptor RNA activator is the first functional RNA encoding a protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Aligning multiple genomic sequences with the threaded blockset aligner

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Inhibition of zebrafish fgf8 pre-mRNA splicing with morpholino oligos: a quantifiable method for gene knockdown.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Beta-catenin signaling activity dissected in the early Xenopus embryo: a novel antisense approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Stages of embryonic development of the zebrafish

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Long Nonprotein-Coding RNAs in Plants.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Rearrangement rate following the whole-genome duplication in teleosts.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376356

Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22196729

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2011.11.055

1 reference

31 July 2017

1 reference

31 July 2017

1 reference