Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish (Q80867069)

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scientific article published on 01 August 2004

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English	Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish	scientific article published on 01 August 2004

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PubMed publication ID

15486693

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title

Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish (English)

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PubMed publication ID

15486693

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main subject

fish

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whole genome duplication

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author

Axel Meyer

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4

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PubMed publication ID

15486693

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Simone Hoegg

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Simone Hoegg

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PubMed publication ID

15486693

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Henner Brinkmann

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2

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PubMed publication ID

15486693

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John S Taylor

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3

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15486693

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publication date

1 August 2004

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PubMed publication ID

15486693

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4 January 2020

published in

Journal of Molecular Evolution

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PubMed publication ID

15486693

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volume

59

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15486693

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2

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15486693

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page(s)

190-203

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15486693

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cites work

Preservation of duplicate genes by complementary, degenerative mutations

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/15486693

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Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes

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Vertebrate evolution by interspecific hybridisation--are we polyploid?

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Archetypal organization of the amphioxus Hox gene cluster.

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An approximately unbiased test of phylogenetic tree selection

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Tyrosinase gene mutations associated with type IB ("yellow") oculocutaneous albinism

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12 December 2020

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Tyrosinase gene expression in zebrafish embryos

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PubMed

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12 December 2020

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Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences.

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12 December 2020

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Genomics. Gene duplication and evolution

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12 December 2020

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Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes

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12 December 2020

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The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: ancient establishment of the consensus vertebrate gene order

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12 December 2020

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Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions

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12 December 2020

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Cloning and expression of three members of the zebrafish Bmp family: Bmp2a, Bmp2b and Bmp4.

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12 December 2020

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A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution.

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12 December 2020

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Phosphoglucose isomerases of hagfish, zebrafish, gray mullet, toad, and snake, with reference to the evolution of the genes in vertebrates

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Genomic clocks and evolutionary timescales

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12 December 2020

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Phylogenetic relationships of neopterygian fishes, inferred from mitochondrial DNA sequences

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12 December 2020

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Inferring confidence sets of possibly misspecified gene trees.

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12 December 2020

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Embryonic expression and nuclear localization of Xenopus homeobox (Xhox) gene products.

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12 December 2020

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A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences

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The human HOX gene family

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A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences

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12 December 2020

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Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms

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12 December 2020

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Genome duplication, a trait shared by 22000 species of ray-finned fish

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12 December 2020

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The general stochastic model of nucleotide substitution

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How Many Nucleotides Are Required to Resolve a Phylogenetic Problem? The Use of a New Statistical Method Applicable to Available Sequences

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12 December 2020

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Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish".

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12 December 2020

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Wanda: a database of duplicated fish genes

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Evidence for a period of directional selection following gene duplication in a neurally expressed locus of triosephosphate isomerase

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12 December 2020

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Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

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12 December 2020

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Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators

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12 December 2020

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The evolutionary demography of duplicate genes

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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12 December 2020

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The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.

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PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates

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Genome duplication, divergent resolution and speciation

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A 28S rRNA-based phylogeny of the gnathostomes: first steps in the analysis of conflict and congruence with morphologically based cladograms

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Comparative genomics provides evidence for an ancient genome duplication event in fish

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Increased taxon sampling greatly reduces phylogenetic error

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An ancestral whole-genome duplication may not have been responsible for the abundance of duplicated fish genes.

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Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish

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Gene duplication and the uniqueness of vertebrate genomes circa 1970-1999.

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Two sox9 genes on duplicated zebrafish chromosomes: expression of similar transcription activators in distinct sites

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The probability of duplicate gene preservation by subfunctionalization

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Zebrafish hox clusters and vertebrate genome evolution

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A large family of putative transmembrane receptors homologous to the product of the Drosophila tissue polarity gene frizzled

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MUST, a computer package of Management Utilities for Sequences and Trees

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12 December 2020

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Duplicate mitf genes in zebrafish: complementary expression and conservation of melanogenic potential

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A molecular timescale for vertebrate evolution

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The evolutionary fate and consequences of duplicate genes

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PAML: a program package for phylogenetic analysis by maximum likelihood

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Cloning of two loci for synapse protein Snap25 in zebrafish: comparison of paralogous linkage groups suggests loss of one locus in the mammalian lineage

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Zebrafish comparative genomics and the origins of vertebrate chromosomes

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Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

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MEGA2: molecular evolutionary genetics analysis software

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Expression patterns of zebrafish sox11A, sox11B and sox21.

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The murine and Drosophila homeobox gene complexes have common features of organization and expression.

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The syntenic relationship of the zebrafish and human genomes.

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Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion

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MRBAYES: Bayesian inference of phylogenetic trees

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

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Expression of the tyrosinase-encoding gene in a colorless melanophore mutant of the medaka fish, Oryzias latipes

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

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Molecular phylogeny of osteoglossoids: a new model for Gondwanian origin and plate tectonic transportation of the Asian arowana

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Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

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Gen(om)e duplications in the evolution of early vertebrates

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Identifiers

DOI

10.1007/S00239-004-2613-Z

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Europe PubMed Central

PubMed publication ID

15486693

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15486693%20AND%20SRC:MED&resulttype=core&format=json

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4 January 2020

Dimensions Publication ID

1012127516

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PubMed publication ID

15486693

1 reference

stated in

Europe PubMed Central

PubMed publication ID

15486693

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15486693%20AND%20SRC:MED&resulttype=core&format=json

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4 January 2020

 

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