For Developers
PMC hosts a number of important article datasets and makes our APIs and some code available via public code repositories.
- Not all articles in PMC are available for text mining and other reuse.
- The PMC Cloud Service, PMC OAI-PMH Service, PMC FTP Service, E-Utilities and BioC API are the only services that may be used for automated retrieval of PMC content. Systematic retrieval (or bulk retrieval) of articles through any other automated process is prohibited.
- License terms vary. Please refer to the license statement in each article for specific terms of use.
- Users of this dataset are directly and solely responsible for compliance with copyright restrictions and are expected to adhere to the terms and conditions defined by the copyright holder (see the PMC Copyright Notice).
NCBI Entrez Programming Utilities (E-Utilities)
E-Utilities is a set of server-side programs that provides a stable interface into all the NCBI databases, including PMC.
PMC Article Datasets
We offer several methods for automated retrieval of articles in machine-readable formats.
Utilities & Tools Listserv
Subscribe to our low volume push-only listserv for updates on utilities and tools helpful for working with PMC.
Cloud Service
NLM provides cloud service access to the PMC Open Access Subset and the PMC Author Manuscript Dataset for faster retrieval. As part of this service, content from these datasets is accessible to users on Amazon Web Services (AWS), without charge, through either an HTTPS or S3 URL, and without any log-in requirement for retrieval. Cloud Service documentation is available on the PMC Cloud Service and Accessing PMC Article Datasets Using AWS pages.
APIs
| API Name | Description | Documentation |
|---|---|---|
| OA | Find citation data, license information, update date, FTP file location and more for Open Access Subset articles that can be downloaded from our FTP site. Base URL: https://www.ncbi.nlm.nih.gov/pmc/utils/oa/oa.fcgi |
Learn more |
| OAI-PMH | Access metadata for all items in our archive, as well as the full text for a subset of these items that have Creative Commons or similar licenses. Base URL: https://www.ncbi.nlm.nih.gov/pmc/oai/oai.cgi |
Learn more |
| BioC | Access to the full text of all the Open Access Subset articles in the BioC format XML or JSON Base URL: https://www.ncbi.nlm.nih.gov/research/bionlp/RESTful/pmcoa.cgi |
Learn more |
| PMC ID Converter | Programmatically convert between the various IDs used in our databases, such as PMCIDs, PMIDs, DOIs and more. Base URL: https://www.ncbi.nlm.nih.gov/pmc/utils/idconv/v1.0/ |
Learn more |
| Literature Citation Exporter | Get formatted citations and tag formats, such as MEDLINE or RIS, for journal articles from PubMed and PMC. Base URL: https://api.ncbi.nlm.nih.gov/lit/ctxp/v1/pmc/ |
Learn more |
Public Code Respositories
PMC maintains some of our software on GitHub, within the NCBI organization.
Developer help
The following pages address the most common problems that developers face (as determined by the queries that we've received to our help desk).
How do I:
- retrieve PMC article identifiers (PMCIDs) from a search?
- get article metadata?
- find articles that cite a given article, or that a given article cites?
- find records in other NCBI databases referenced by PMC articles?
- cross-reference article identifiers?
- do text mining / retrieving full text?
- maintain a local copy of the OA subset?
- find articles by license?