(Q34306235)

English

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

scientific article

In more languages

default for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

gene duplication

1 reference

based on heuristic

inferred from title

3

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

2

object named as

Eric Peatman

0 references

author name string

Jianguo Lu

1

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Joshua Lewis

4

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Zhanjiang Liu

5

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

language of work or name

0 references

publication date

15 June 2012

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

13

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

246

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Gene conversion and evolution of gene families: an overview

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

A computer simulator for assessing different challenges and strategies of de novo sequence assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

High Spontaneous Rate of Gene Duplication in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Rapidly evolving fish genomes and teleost diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Tandemly arrayed genes in vertebrate genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

A role for gene duplication and natural variation of gene expression in the evolution of metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Evolution of pigment synthesis pathways by gene and genome duplication in fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

A roadmap of tandemly arrayed genes in the genomes of human, mouse, and rat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Role of positive selection in the retention of duplicate genes in mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Two rounds of whole genome duplication in the ancestral vertebrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Coelacanth genome sequence reveals the evolutionary history of vertebrate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Gene duplication: the genomic trade in spare parts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Structural dynamics of eukaryotic chromosome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Functional divergence of two zebrafish midkine growth factors following fish-specific gene duplication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

The temporal distribution of gene duplication events in a set of highly conserved human gene families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Extensive genomic duplication during early chordate evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

The evolutionary fate and consequences of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Preservation of duplicate genes by complementary, degenerative mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Zebrafish hox clusters and vertebrate genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Fish specific duplication of Dmrt2: characterization of zebrafish Dmrt2b

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Whole genome duplication: challenges and considerations associated with sequence orthology assignment in Salmoninae

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

The gain and loss of genes during 600 million years of vertebrate evolution

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Evolutionary rates of duplicate genes in fish and mammals.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

28 October 2018

Gene duplications and the origins of vertebrate development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

28 October 2018

Vertebrate genome evolution and the zebrafish gene map

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Timing and Effects of Template Number for Gene Conversion of Major Histocompatibility Complex Genes in the Mouse

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CC chemokines in zebrafish: evidence for extensive intrachromosomal gene duplications

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Olfactory receptor gene family evolution in stickleback and medaka fishes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Shotgun sequence assembly and recent segmental duplications within the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-13-246

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

release_uq4s5nbmezasro2asuy3mksppm

1 reference

https://api.fatcat.wiki/v0/release/uq4s5nbmezasro2asuy3mksppm

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34306235&oldid=1836375067"