(Q21184000)

11 July 2022

Jernej Ule

Jernej

Ule

1 reference

11 July 2022

Julian König

Julian

König

1 reference

11 July 2022

Michaela Frye

Michaela

Frye

1 reference

11 July 2022

Blaž Zupan

Blaž

Zupan

1 reference

11 July 2022

Yoichiro Sugimoto

Yoichiro

Sugimoto

1 reference

22863408

11 July 2022

Shobbir Hussain

series ordinal

author given names

Shobbir

author last names

Hussain

1 reference

22863408

Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

11 July 2022

language of work or name

English

0 references

publication date

2012

0 references

0 references

0 references

0 references

R67

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: isoform structure, expression, and functions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Protein-RNA and Protein-Protein Recognition by Dual KH1/2 Domains of the Neuronal Splicing Factor Nova-1

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

WebLogo: A Sequence Logo Generator

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Protein-RNA interactions: new genomic technologies and perspectives

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

CLIP identifies Nova-regulated RNA networks in the brain

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Activation of paternally expressed genes and perinatal death caused by deletion of the Gtl2 gene

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

5-methylcytosine in RNA: detection, enzymatic formation and biological functions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

The nucleolar RNA methyltransferase Misu (NSun2) is required for mitotic spindle stability

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Evolution of Nova-dependent splicing regulation in the brain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Nova autoregulation reveals dual functions in neuronal splicing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Determination and augmentation of RNA sequence specificity of the Nova K-homology domains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053741

An RNA map predicting Nova-dependent splicing regulation

27 September 2017

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-8-R67

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-8-R67

RNA methyltransferases utilize two cysteine residues in the formation of 5-methylcytosine

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-8-R67

Structural determinants of slippage-mediated mutations by human immunodeficiency virus type 1 reverse transcriptase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-8-R67

Cytotoxic effects of thiopyrimidines

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22863408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Assembly of protein-RNA complexes using natural RNA and mutant forms of an RNA cytosine methyltransferase

1 reference

https://pubmed.ncbi.nlm.nih.gov/22863408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2012-13-8-R67

1 reference

Dimensions Publication ID

1011415000

0 references

Fatcat ID

release_5ahb6qyicbekbag2ovgxuigaj4

0 references

1 reference

1 reference

22863408

1 reference