(Q45169446)

10 December 2017

title

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins (English)

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10 December 2017

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10 December 2017

Jean Hausser

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Lukasz Jaskiewicz

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10 December 2017

Shivendra Kishore

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10 December 2017

Lukas Burger

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10 December 2017

Mohsen Khorshid

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10 December 2017

publication date

15 May 2011

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10 December 2017

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10 December 2017

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10 December 2017

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10 December 2017

page(s)

559-564

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Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome

10 December 2017

cites work

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https://api.crossref.org/works/10.1038%2FNMETH.1608

A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles

21 January 2018

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Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs

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Coordinated posttranscriptional mRNA population dynamics during T-cell activation

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Relief of microRNA-mediated translational repression in human cells subjected to stress

21 January 2018

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RNA-binding protein Dnd1 inhibits microRNA access to target mRNA

21 January 2018

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HuR recruits let-7/RISC to repress c-Myc expression

21 January 2018

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A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIP identifies Nova-regulated RNA networks in the brain

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

Argonaute proteins at a glance

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIP: a method for identifying protein-RNA interaction sites in living cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIP: construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo

21 January 2018

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Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

21 January 2018

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High sequence specificity of micrococcal nuclease

21 January 2018

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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

21 January 2018

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Structural basis for recognition of AU-rich element RNA by the HuD protein

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

21 January 2018

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Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs

21 January 2018

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Overexpression of HuR, a nuclear-cytoplasmic shuttling protein, increases the in vivo stability of ARE-containing mRNAs

21 January 2018

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

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A multifunctional human Argonaute2-specific monoclonal antibody

21 January 2018

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Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs

21 January 2018

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Computational analysis of small RNA cloning data

21 January 2018

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Laser cross-linking of nucleic acids to proteins. Methodology and first applications to the phage T4 DNA replication system.

21 January 2018

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12 December 2020

Eukaryotic mRNPs may represent posttranscriptional operons

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12 December 2020

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

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12 December 2020

Kinetics of the photochemical addition of cysteine-35S to polynucleotides and nucleic acids

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12 December 2020

ELAV protein HuA (HuR) can redistribute between nucleus and cytoplasm and is upregulated during serum stimulation and T cell activation.

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12 December 2020

Ribonuclease T1, Structure and function

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12 December 2020

Identifiers

DOI

10.1038/NMETH.1608

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Dimensions Publication ID

10 December 2017

1025585804

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