(Q64122639)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143323%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

2 references

25 November 2020

15 July 2021

Enter the Matrix: Factorization Uncovers Knowledge from Omics (English)

1 reference

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19 April 2020

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1 reference

25 November 2020

statistical data interpretation

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15 July 2021

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19 April 2020

1 reference

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19 April 2020

Casey S Greene

1 reference

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19 April 2020

Elana J Fertig

1 reference

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19 April 2020

author name string

Genevieve L Stein-O'Brien

1 reference

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19 April 2020

Raman Arora

1 reference

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19 April 2020

Alexander V Favorov

1 reference

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19 April 2020

Lana X Garmire

1 reference

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19 April 2020

Yifeng Li

1 reference

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19 April 2020

Aloune Ngom

1 reference

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19 April 2020

Michael F Ochs

1 reference

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19 April 2020

Yanxun Xu

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19 April 2020

language of work or name

English

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publication date

22 August 2018

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19 April 2020

1 October 2018

2 references

25 November 2020

15 July 2021

3 references

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19 April 2020

25 November 2020

15 July 2021

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19 April 2020

issue

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19 April 2020

page(s)

790-805

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Creative Commons Attribution

19 April 2020

2 references

25 November 2020

15 July 2021

0 references

A new method for spectral decomposition using a bilinear Bayesian approach

1 reference

12 December 2020

Learning the parts of objects by non-negative matrix factorization

1 reference

12 December 2020

Inference of population structure using multilocus genotype data

1 reference

12 December 2020

Independent component analysis: algorithms and applications

1 reference

12 December 2020

Singular value decomposition for genome-wide expression data processing and modeling

1 reference

12 December 2020

Separation of samples into their constituents using gene expression data

1 reference

12 December 2020

Correspondence analysis applied to microarray data

1 reference

12 December 2020

Model-based clustering and data transformations for gene expression data

1 reference

12 December 2020

Linear modes of gene expression determined by independent component analysis

1 reference

12 December 2020

Application of Bayesian decomposition for analysing microarray data.

1 reference

12 December 2020

Application of independent component analysis to microarrays

1 reference

12 December 2020

Network component analysis: reconstruction of regulatory signals in biological systems

1 reference

12 December 2020

Metagenes and molecular pattern discovery using matrix factorization

1 reference

12 December 2020

A module map showing conditional activity of expression modules in cancer

1 reference

12 December 2020

Canonical correlation analysis: an overview with application to learning methods

1 reference

12 December 2020

Multiple-laboratory comparison of microarray platforms

1 reference

12 December 2020

A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans

1 reference

12 December 2020

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

12 December 2020

Determination of strongly overlapping signaling activity from microarray data.

1 reference

12 December 2020

Discovery of principles of nature from mathematical modeling of DNA microarray data

1 reference

12 December 2020

Elucidating the altered transcriptional programs in breast cancer using independent component analysis

1 reference

12 December 2020

Determining transcription factor activity from microarray data using Bayesian Markov chain Monte Carlo sampling

1 reference

12 December 2020

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

1 reference

12 December 2020

Nonnegative matrix factorization: an analytical and interpretive tool in computational biology

1 reference

12 December 2020

Genes mirror geography within Europe

1 reference

12 December 2020

Computer science. Beyond the data deluge

1 reference

12 December 2020

Public databases and software for the pathway analysis of cancer genomes.

1 reference

12 December 2020

Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus

1 reference

12 December 2020

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

1 reference

12 December 2020

Detection of treatment-induced changes in signaling pathways in gastrointestinal stromal tumors using transcriptomic data

1 reference

12 December 2020

Gene set enrichment analysis made simple

1 reference

12 December 2020

Asymptotic conditional singular value decomposition for high-dimensional genomic data.

1 reference

12 December 2020

Independent component analysis: mining microarray data for fundamental human gene expression modules

1 reference

12 December 2020

Probabilistic analysis of gene expression measurements from heterogeneous tissues

1 reference

12 December 2020

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data

1 reference

12 December 2020

Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.

1 reference

12 December 2020

Differential expression analysis for sequence count data

1 reference

12 December 2020

Ten years of pathway analysis: current approaches and outstanding challenges

1 reference

12 December 2020

Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma

1 reference

12 December 2020

The life history of 21 breast cancers

1 reference

12 December 2020

Studying and modelling dynamic biological processes using time-series gene expression data

1 reference

12 December 2020

Identifying context-specific transcription factor targets from prior knowledge and gene expression data

1 reference

12 December 2020

CloudNMF: a MapReduce implementation of nonnegative matrix factorization for large-scale biological datasets

1 reference

12 December 2020

Signatures of mutational processes in human cancer

1 reference

12 December 2020

Network-based stratification of tumor mutations

1 reference

12 December 2020

Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis

1 reference

12 December 2020

Pattern identification in time-course gene expression data with the CoGAPS matrix factorization

1 reference

12 December 2020

Discovering subgroups of patients from DNA copy number data using NMF on compacted matrices

1 reference

12 December 2020

SVD identifies transcript length distribution functions from DNA microarray data and reveals evolutionary forces globally affecting GBM metabolism

1 reference

12 December 2020

PyClone: statistical inference of clonal population structure in cancer.

1 reference

12 December 2020

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

1 reference

12 December 2020

Matrix Factorization for Transcriptional Regulatory Network Inference

1 reference

12 December 2020

Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences

1 reference

12 December 2020

Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals insights into luminal and basal subtypes

1 reference

12 December 2020

limma powers differential expression analyses for RNA-sequencing and microarray studies

1 reference

12 December 2020

PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors

1 reference

12 December 2020

Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

1 reference

12 December 2020

MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling

1 reference

12 December 2020

ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

1 reference

12 December 2020

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis

1 reference

12 December 2020

Inferring causal molecular networks: empirical assessment through a community-based effort

1 reference

12 December 2020

Constructing 3D interaction maps from 1D epigenomes.

1 reference

12 December 2020

Dimension reduction techniques for the integrative analysis of multi-omics data

1 reference

12 December 2020

Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks

1 reference

12 December 2020

Computational genomics tools for dissecting tumour-immune cell interactions

1 reference

12 December 2020

Tensor decomposition for multiple-tissue gene expression experiments

1 reference

12 December 2020

FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data

1 reference

12 December 2020

Mutational signatures associated with tobacco smoking in human cancer

1 reference

12 December 2020

A review on machine learning principles for multi-view biological data integration

1 reference

12 December 2020

Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization

1 reference

12 December 2020

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.

1 reference

12 December 2020

Visualizing the structure of RNA-seq expression data using grade of membership models.

1 reference

12 December 2020

Dynamic modeling and network approaches for omics time course data: overview of computational approaches and applications

1 reference

12 December 2020

Bayesian inference for intratumour heterogeneity in mutations and copy number variation

1 reference

12 December 2020

More Is Better: Recent Progress in Multi-Omics Data Integration Methods

1 reference

12 December 2020

Unsupervised Extraction of Stable Expression Signatures from Public Compendia with an Ensemble of Neural Networks.

1 reference

12 December 2020

Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.

1 reference

12 December 2020

Improved data-driven likelihood factorizations for transcript abundance estimation

1 reference

12 December 2020

f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.

1 reference

12 December 2020

Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer

1 reference

12 December 2020

A general and flexible method for signal extraction from single-cell RNA-seq data.

1 reference

12 December 2020

Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics.

1 reference

12 December 2020

PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition.

1 reference

12 December 2020

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

1 reference

12 December 2020

10.1016/J.TIG.2018.07.003

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143323%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143323%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

PubMed publication ID

30143323

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30143323%20AND%20SRC:MED&resulttype=core&format=json