(Q47559173)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

title

A general and flexible method for signal extraction from single-cell RNA-seq data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

1 reference

corrigendum / erratum

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

Sandrine Dudoit

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

Fanny Perraudeau

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

Svetlana Gribkova

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

language of work or name

English

0 references

publication date

18 January 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

page(s)

284

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

9 April 2020

start time

18 January 2018

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

22 May 2018

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Normalizing single-cell RNA sequencing data: challenges and opportunities

22 May 2018

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Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

22 May 2018

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Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

22 May 2018

1 reference

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Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

22 May 2018

1 reference

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22 May 2018

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Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

22 May 2018

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Batch effects and the effective design of single-cell gene expression studies

22 May 2018

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Simultaneous dimension reduction and adjustment for confounding variation

22 May 2018

1 reference

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Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

22 May 2018

1 reference

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TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis

22 May 2018

1 reference

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Design and computational analysis of single-cell RNA-sequencing experiments

22 May 2018

1 reference

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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

22 May 2018

1 reference

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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

22 May 2018

1 reference

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Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

22 May 2018

1 reference

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ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

22 May 2018

1 reference

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Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

22 May 2018

1 reference

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Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

22 May 2018

1 reference

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The technology and biology of single-cell RNA sequencing

22 May 2018

1 reference

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

22 May 2018

1 reference

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Spatial reconstruction of single-cell gene expression data

22 May 2018

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Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

22 May 2018

1 reference

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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

22 May 2018

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Normalization of RNA-seq data using factor analysis of control genes or samples

22 May 2018

1 reference

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Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

22 May 2018

1 reference

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Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

22 May 2018

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

22 May 2018

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Bayesian approach to single-cell differential expression analysis

22 May 2018

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

22 May 2018

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

1 reference

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22 May 2018

1 reference

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Spectral Regularization Algorithms for Learning Large Incomplete Matrices.

22 May 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

22 May 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5773593

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5773593

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5773593

Capturing heterogeneity in gene expression studies by surrogate variable analysis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5773593

Adjusting batch effects in microarray expression data using empirical Bayes methods

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5773593

Tight clustering: a resampling-based approach for identifying stable and tight patterns in data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5773593

Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

22 May 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-02554-5

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-02554-5

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-02554-5

Whole-exome sequencing for finding de novo mutations in sporadic mental retardation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-02554-5

A smart local moving algorithm for large-scale modularity-based community detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-02554-5

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-02554-5

inferred from DOI database lookup

7 January 2021

based on heuristic

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29348443

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29348443

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/S41467-017-02554-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

PubMed publication ID

29348443

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29348443%20AND%20SRC:MED&resulttype=core&format=json