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@wuaipinglab

Wu Aiping Lab

Suzhou Institute of Systems Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College

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  1. covSampler covSampler Public

    A subsampling method for large-scale SARS-CoV-2 genome data sets

    Python 2

  2. CovRecomb CovRecomb Public

    A method to detect the inter-lineage recombinant of SARS-CoV-2

    Jupyter Notebook 1

  3. ImmuCC ImmuCC Public

    Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

    R 23 23

  4. RECDS RECDS Public

    RECDS identifies cluster-transition determining sites underlying the antigenic evolution of seasonal influenza viruses

    Python 3 1

  5. virome_pipeline virome_pipeline Public

    A general pipeline constructed for viral metagenomes analysis from NGS read data.

    R 9 1

  6. sitePath sitePath Public

    Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations

    R 8 2

Repositories

Showing 10 of 21 repositories
  • CovRecomb Public

    A method to detect the inter-lineage recombinant of SARS-CoV-2

    wuaipinglab/CovRecomb’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 14, 2024
  • scImmuCC Public

    Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.

    wuaipinglab/scImmuCC’s past year of commit activity
    R 6 2 5 0 Updated May 31, 2024
  • covSampler Public

    A subsampling method for large-scale SARS-CoV-2 genome data sets

    wuaipinglab/covSampler’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 3, 2023
  • sarscov2-omicron-nyc Public

    Early Introduction and Community Transmission of SARS-CoV-2 Omicron Variant, New York, New York, USA

    wuaipinglab/sarscov2-omicron-nyc’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Aug 1, 2023
  • estimate-bottleneck-size Public
    wuaipinglab/estimate-bottleneck-size’s past year of commit activity
    0 0 0 0 Updated Jul 24, 2023
  • CovRecomb_Simulation_Test Public

    The simulation test for the CovRecomb method using SARS-CoV-2 datasets.

    wuaipinglab/CovRecomb_Simulation_Test’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 4, 2023
  • SARS-CoV-2_webhub Public

    Website for SARS-CoV-2 genome evolution research

    wuaipinglab/SARS-CoV-2_webhub’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Nov 30, 2022
  • sitePath_exec Public

    Command line executable for sitePath

    wuaipinglab/sitePath_exec’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 30, 2022
  • SARS-CoV-2_co-infection Public

    A computational method to identify the compositional lineage(s) in SARS-CoV-2 infected samples

    wuaipinglab/SARS-CoV-2_co-infection’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 5, 2022
  • sitePath Public

    Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations

    wuaipinglab/sitePath’s past year of commit activity
    R 8 MIT 2 4 (1 issue needs help) 0 Updated Sep 26, 2022
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