SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

A course on genomics and bioinformatics from WU

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Single cell interactive plotting tools

Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data

A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX

So you want to do a: Single Cell RNA-seq experiment

Tool for quick and standardized annotation of single cell transcriptomics data

An effective tool for single-cell RNA sequencing.

Gotta keep the brain empty to learn more. This is my easily digestible backup.

10x Cell Ranger Docker Image

I've written a few functions that help me look through scRNA-seq data while working with Seurat.

Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data

single-cell-RNA-Seq-Data-Analysis-Methods

Creater: Charlene717

This repository contains pipelines and scripts for analyzing single-cell eQTL data using mixed models, which enable the control of structured expression data with the Julia programming language.