Live code in Pandoc Markdown

A curated list of reproducible research case studies, projects, tutorials, and media

REANA: Reusable research data analysis platform

DaCy: The State of the Art Danish NLP pipeline using SpaCy

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Popperized MLPerf benchmark workflows

Snakemake workflow for Salmon quantification and FastQC quality controls

Build a re-usable end-to-end pipeline for predicting short-term rental prices in NYC

Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

Detect replication slippage variants at microsatellite regions

Python utility functions

A Python package for data archiving and linking with code

Tutorial for working with machine learning algorithms in Python.

Count your fastq-formatted rna-seq reads with Salmon

Perform basic QC over sequenced data