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read-alignments

Here are 2 public repositories matching this topic...

Mangul-Lab-USC / review-technology-dictates-algorithms

A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.…

hts smith-waterman needleman-wunsch heuristics genome-analysis sequence-alignment illumina-sequencing read-mapping nanopore-sequencing hifi-read pacbio-sequencing read-alignments

Updated Jul 7, 2021
Jupyter Notebook

svkazakov / ra-visualizer

Genome read alignments visualizer

genome alignments genome-analysis reads read-alignments

Updated Oct 24, 2023
Python

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